Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC139713.2-201ENST00000641328 2723 ntBASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
HDDC3Q8N4P3 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 AC142381.1-201ENST00000426099 345 ntBASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 AL359881.2-201ENST00000602973 570 ntBASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 AC106820.2-201ENST00000563775 3264 ntBASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDDC3Q8N4P3 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
HDDC3Q8N4P3 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 KRT8P39-201ENST00000396270 1433 ntBASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 OR8S1-201ENST00000310194 1080 ntBASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 CRB3P1-201ENST00000449338 276 ntBASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 PRYP6-201ENST00000514804 343 ntBASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 CR383656.12-201ENST00000549567 513 ntBASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 MIR4453-201ENST00000584019 89 ntBASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms