Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC22.26■■□□□ 1.15
NPHP3Q7Z494 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC22.26■■□□□ 1.15
NPHP3Q7Z494 ABBA01031660.1-201ENST00000635219 756 ntBASIC22.26■■□□□ 1.15
NPHP3Q7Z494 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC22.26■■□□□ 1.15
NPHP3Q7Z494 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 AC099548.2-209ENST00000480264 625 ntBASIC22.25■■□□□ 1.15
NPHP3Q7Z494 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 AL391069.4-201ENST00000609583 481 ntBASIC22.25■■□□□ 1.15
NPHP3Q7Z494 AL138688.1-201ENST00000624851 1594 ntBASIC22.25■■□□□ 1.15
NPHP3Q7Z494 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC22.25■■□□□ 1.15
NPHP3Q7Z494 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 LINC02012-201ENST00000608206 1725 ntBASIC22.24■■□□□ 1.15
NPHP3Q7Z494 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 AL442647.2-201ENST00000429864 857 ntBASIC22.24■■□□□ 1.15
NPHP3Q7Z494 CSF2RBP1-201ENST00000447905 391 ntBASIC22.24■■□□□ 1.15
NPHP3Q7Z494 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 AGER-214ENST00000538695 487 ntTSL 2 BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 SUOX-214ENST00000551841 906 ntTSL 3 BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 AL022328.1-201ENST00000610050 478 ntBASIC22.24■■□□□ 1.15
NPHP3Q7Z494 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP3Q7Z494 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 COMP-202ENST00000425807 2292 ntTSL 2 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 RN7SL399P-201ENST00000471648 279 ntBASIC22.23■■□□□ 1.15
NPHP3Q7Z494 TPI1-206ENST00000488464 791 ntTSL 5 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 AC020765.3-201ENST00000613051 740 ntBASIC22.23■■□□□ 1.15
NPHP3Q7Z494 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP3Q7Z494 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
NPHP3Q7Z494 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
NPHP3Q7Z494 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms