Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCNA1P78396 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCNA1P78396 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNA1P78396 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.78■□□□□ 0.6
CCNA1P78396 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNA1P78396 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNA1P78396 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNA1P78396 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.78■□□□□ 0.6
CCNA1P78396 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNA1P78396 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC18.78■□□□□ 0.6
CCNA1P78396 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNA1P78396 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCNA1P78396 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CCNA1P78396 RASL12-203ENST00000434605 982 ntTSL 2 BASIC18.78■□□□□ 0.6
CCNA1P78396 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC18.78■□□□□ 0.6
CCNA1P78396 INE1-201ENST00000456273 945 ntBASIC18.78■□□□□ 0.6
CCNA1P78396 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCNA1P78396 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC18.78■□□□□ 0.6
CCNA1P78396 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC18.78■□□□□ 0.6
CCNA1P78396 AC044860.1-202ENST00000559481 777 ntBASIC18.78■□□□□ 0.6
CCNA1P78396 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC18.78■□□□□ 0.6
CCNA1P78396 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCNA1P78396 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC18.78■□□□□ 0.6
CCNA1P78396 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCNA1P78396 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.78■□□□□ 0.6
CCNA1P78396 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNA1P78396 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNA1P78396 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNA1P78396 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCNA1P78396 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.78■□□□□ 0.6
CCNA1P78396 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.78■□□□□ 0.6
CCNA1P78396 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCNA1P78396 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.77■□□□□ 0.6
CCNA1P78396 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCNA1P78396 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCNA1P78396 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCNA1P78396 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCNA1P78396 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.77■□□□□ 0.6
CCNA1P78396 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCNA1P78396 AL512384.1-201ENST00000406683 331 ntBASIC18.77■□□□□ 0.6
CCNA1P78396 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC18.77■□□□□ 0.6
CCNA1P78396 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC18.77■□□□□ 0.6
CCNA1P78396 AC114501.2-201ENST00000439631 535 ntBASIC18.77■□□□□ 0.6
CCNA1P78396 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
CCNA1P78396 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCNA1P78396 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC18.77■□□□□ 0.6
CCNA1P78396 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC18.77■□□□□ 0.6
CCNA1P78396 POLE2-203ENST00000553805 496 ntTSL 2 BASIC18.77■□□□□ 0.6
CCNA1P78396 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC18.77■□□□□ 0.6
CCNA1P78396 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC18.77■□□□□ 0.6
CCNA1P78396 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC18.77■□□□□ 0.6
CCNA1P78396 SERF2-217ENST00000630046 862 ntTSL 5 BASIC18.77■□□□□ 0.6
CCNA1P78396 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC18.77■□□□□ 0.6
CCNA1P78396 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC18.77■□□□□ 0.6
CCNA1P78396 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCNA1P78396 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCNA1P78396 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCNA1P78396 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCNA1P78396 KRT8P12-202ENST00000472924 1397 ntBASIC18.77■□□□□ 0.6
CCNA1P78396 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
CCNA1P78396 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.77■□□□□ 0.59
CCNA1P78396 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.76■□□□□ 0.59
CCNA1P78396 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCNA1P78396 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
CCNA1P78396 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCNA1P78396 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCNA1P78396 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCNA1P78396 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCNA1P78396 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
CCNA1P78396 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCNA1P78396 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.76■□□□□ 0.59
CCNA1P78396 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCNA1P78396 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC18.76■□□□□ 0.59
CCNA1P78396 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CCNA1P78396 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCNA1P78396 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCNA1P78396 MEP1AP4-201ENST00000423244 1087 ntBASIC18.76■□□□□ 0.59
CCNA1P78396 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.76■□□□□ 0.59
CCNA1P78396 HLA-V-201ENST00000429037 534 ntBASIC18.76■□□□□ 0.59
CCNA1P78396 CD81-207ENST00000481687 890 ntTSL 2 BASIC18.76■□□□□ 0.59
CCNA1P78396 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CCNA1P78396 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCNA1P78396 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC18.76■□□□□ 0.59
CCNA1P78396 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC18.76■□□□□ 0.59
CCNA1P78396 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC18.76■□□□□ 0.59
CCNA1P78396 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC18.76■□□□□ 0.59
CCNA1P78396 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CCNA1P78396 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
CCNA1P78396 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
CCNA1P78396 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC18.76■□□□□ 0.59
CCNA1P78396 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC18.76■□□□□ 0.59
CCNA1P78396 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CCNA1P78396 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CCNA1P78396 AL033527.5-202ENST00000641632 1098 ntBASIC18.76■□□□□ 0.59
CCNA1P78396 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.76■□□□□ 0.59
CCNA1P78396 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.76■□□□□ 0.59
CCNA1P78396 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.76■□□□□ 0.59
CCNA1P78396 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CCNA1P78396 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CCNA1P78396 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms