Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
COL4A4P53420 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC17.52■□□□□ 0.4
COL4A4P53420 AP002490.2-201ENST00000524791 560 ntBASIC17.52■□□□□ 0.4
COL4A4P53420 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL4A4P53420 MPDU1-223ENST00000582151 728 ntBASIC17.52■□□□□ 0.4
COL4A4P53420 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC17.52■□□□□ 0.4
COL4A4P53420 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC17.52■□□□□ 0.4
COL4A4P53420 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
COL4A4P53420 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL4A4P53420 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL4A4P53420 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL4A4P53420 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
COL4A4P53420 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL4A4P53420 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.52■□□□□ 0.4
COL4A4P53420 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.52■□□□□ 0.4
COL4A4P53420 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL4A4P53420 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL4A4P53420 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL4A4P53420 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.52■□□□□ 0.4
COL4A4P53420 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.52■□□□□ 0.4
COL4A4P53420 KRT8P44-201ENST00000441609 1350 ntBASIC17.52■□□□□ 0.4
COL4A4P53420 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.52■□□□□ 0.4
COL4A4P53420 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL4A4P53420 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.52■□□□□ 0.39
COL4A4P53420 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL4A4P53420 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.52■□□□□ 0.39
COL4A4P53420 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.52■□□□□ 0.39
COL4A4P53420 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL4A4P53420 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL4A4P53420 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL4A4P53420 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL4A4P53420 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
COL4A4P53420 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
COL4A4P53420 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.52■□□□□ 0.39
COL4A4P53420 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL4A4P53420 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
COL4A4P53420 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
COL4A4P53420 AL355994.2-201ENST00000447882 704 ntBASIC17.52■□□□□ 0.39
COL4A4P53420 AC104989.1-201ENST00000519711 778 ntBASIC17.52■□□□□ 0.39
COL4A4P53420 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC17.52■□□□□ 0.39
COL4A4P53420 AC010319.3-201ENST00000597028 470 ntBASIC17.52■□□□□ 0.39
COL4A4P53420 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
COL4A4P53420 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.51■□□□□ 0.39
COL4A4P53420 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL4A4P53420 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
COL4A4P53420 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.51■□□□□ 0.39
COL4A4P53420 HLA-A-202ENST00000376806 1854 ntBASIC17.51■□□□□ 0.39
COL4A4P53420 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL4A4P53420 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.51■□□□□ 0.39
COL4A4P53420 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL4A4P53420 AC022211.2-201ENST00000585075 2527 ntBASIC17.51■□□□□ 0.39
COL4A4P53420 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL4A4P53420 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL4A4P53420 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL4A4P53420 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
COL4A4P53420 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
COL4A4P53420 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC17.51■□□□□ 0.39
COL4A4P53420 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC17.51■□□□□ 0.39
COL4A4P53420 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL4A4P53420 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC17.51■□□□□ 0.39
COL4A4P53420 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC17.51■□□□□ 0.39
COL4A4P53420 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
COL4A4P53420 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL4A4P53420 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.51■□□□□ 0.39
COL4A4P53420 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL4A4P53420 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL4A4P53420 AC004461.2-201ENST00000629517 803 ntBASIC17.51■□□□□ 0.39
COL4A4P53420 KRT8P12-202ENST00000472924 1397 ntBASIC17.5■□□□□ 0.39
COL4A4P53420 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A4P53420 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
COL4A4P53420 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A4P53420 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.5■□□□□ 0.39
COL4A4P53420 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A4P53420 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A4P53420 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A4P53420 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC17.5■□□□□ 0.39
COL4A4P53420 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
COL4A4P53420 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A4P53420 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A4P53420 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A4P53420 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A4P53420 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A4P53420 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A4P53420 GGT4P-201ENST00000623672 1708 ntBASIC17.5■□□□□ 0.39
COL4A4P53420 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A4P53420 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A4P53420 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
COL4A4P53420 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A4P53420 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A4P53420 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A4P53420 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A4P53420 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A4P53420 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC17.49■□□□□ 0.39
COL4A4P53420 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A4P53420 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.49■□□□□ 0.39
COL4A4P53420 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.49■□□□□ 0.39
COL4A4P53420 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A4P53420 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC17.49■□□□□ 0.39
COL4A4P53420 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC17.49■□□□□ 0.39
COL4A4P53420 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms