Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-1P43699 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-1P43699 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-1P43699 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC13.69□□□□□ -0.22
NKX2-1P43699 AC006449.6-201ENST00000612330 2296 ntBASIC13.69□□□□□ -0.22
NKX2-1P43699 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-1P43699 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-1P43699 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC13.69□□□□□ -0.22
NKX2-1P43699 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-1P43699 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-1P43699 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-1P43699 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC13.69□□□□□ -0.22
NKX2-1P43699 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC13.69□□□□□ -0.22
NKX2-1P43699 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-1P43699 ATP5G1P1-201ENST00000448724 379 ntBASIC13.69□□□□□ -0.22
NKX2-1P43699 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
NKX2-1P43699 GUSBP12-201ENST00000513727 720 ntBASIC13.69□□□□□ -0.22
NKX2-1P43699 DUX4L17-201ENST00000557360 1267 ntBASIC13.69□□□□□ -0.22
NKX2-1P43699 DUT-205ENST00000558813 769 ntTSL 2 BASIC13.69□□□□□ -0.22
NKX2-1P43699 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC13.69□□□□□ -0.22
NKX2-1P43699 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC13.69□□□□□ -0.22
NKX2-1P43699 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC13.69□□□□□ -0.22
NKX2-1P43699 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
NKX2-1P43699 AC133561.5-201ENST00000635547 218 ntBASIC13.69□□□□□ -0.22
NKX2-1P43699 PCDHA3-202ENST00000532566 4594 ntBASIC13.69□□□□□ -0.22
NKX2-1P43699 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-1P43699 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-1P43699 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-1P43699 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-1P43699 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-1P43699 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-1P43699 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-1P43699 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-1P43699 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-1P43699 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC13.69□□□□□ -0.22
NKX2-1P43699 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
NKX2-1P43699 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC13.68□□□□□ -0.22
NKX2-1P43699 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 Z83836.1-201ENST00000624605 1642 ntBASIC13.68□□□□□ -0.22
NKX2-1P43699 FOS-208ENST00000555686 1496 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX2-1P43699 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX2-1P43699 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX2-1P43699 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX2-1P43699 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX2-1P43699 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 AC022532.1-201ENST00000624563 1728 ntBASIC13.68□□□□□ -0.22
NKX2-1P43699 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX2-1P43699 SUPT20HL2-201ENST00000486479 2409 ntBASIC13.68□□□□□ -0.22
NKX2-1P43699 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX2-1P43699 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 BAALC-202ENST00000306391 243 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX2-1P43699 BAALC-204ENST00000330955 222 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX2-1P43699 COPE-203ENST00000351079 907 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX2-1P43699 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX2-1P43699 NKTR-203ENST00000442970 646 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX2-1P43699 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC13.68□□□□□ -0.22
NKX2-1P43699 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 COX11P1-201ENST00000489116 835 ntBASIC13.68□□□□□ -0.22
NKX2-1P43699 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC13.68□□□□□ -0.22
NKX2-1P43699 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX2-1P43699 AL138831.2-201ENST00000606564 490 ntBASIC13.68□□□□□ -0.22
NKX2-1P43699 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
NKX2-1P43699 AP002414.2-201ENST00000591780 3365 ntBASIC13.68□□□□□ -0.22
NKX2-1P43699 GGT3P-204ENST00000453783 1664 ntBASIC13.68□□□□□ -0.22
NKX2-1P43699 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
NKX2-1P43699 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC13.68□□□□□ -0.22
NKX2-1P43699 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX2-1P43699 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX2-1P43699 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX2-1P43699 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
NKX2-1P43699 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-1P43699 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX2-1P43699 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX2-1P43699 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC13.68□□□□□ -0.22
NKX2-1P43699 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
NKX2-1P43699 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
NKX2-1P43699 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX2-1P43699 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC13.67□□□□□ -0.22
NKX2-1P43699 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC13.67□□□□□ -0.22
NKX2-1P43699 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms