Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.03■□□□□ 0.32
SLC6A4P31645 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SLC6A4P31645 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.03■□□□□ 0.32
SLC6A4P31645 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SLC6A4P31645 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.03■□□□□ 0.32
SLC6A4P31645 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SLC6A4P31645 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SLC6A4P31645 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.03■□□□□ 0.32
SLC6A4P31645 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.03■□□□□ 0.32
SLC6A4P31645 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.03■□□□□ 0.32
SLC6A4P31645 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.03■□□□□ 0.32
SLC6A4P31645 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.03■□□□□ 0.32
SLC6A4P31645 RFPL4AP1-201ENST00000530883 850 ntBASIC17.03■□□□□ 0.32
SLC6A4P31645 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.03■□□□□ 0.32
SLC6A4P31645 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SLC6A4P31645 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.03■□□□□ 0.32
SLC6A4P31645 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.03■□□□□ 0.32
SLC6A4P31645 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.03■□□□□ 0.32
SLC6A4P31645 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SLC6A4P31645 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SLC6A4P31645 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.03■□□□□ 0.32
SLC6A4P31645 PCDHA12-202ENST00000613593 2588 ntBASIC17.03■□□□□ 0.32
SLC6A4P31645 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.03■□□□□ 0.32
SLC6A4P31645 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SLC6A4P31645 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SLC6A4P31645 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
SLC6A4P31645 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
SLC6A4P31645 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SLC6A4P31645 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SLC6A4P31645 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SLC6A4P31645 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.02■□□□□ 0.32
SLC6A4P31645 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.02■□□□□ 0.32
SLC6A4P31645 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
SLC6A4P31645 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
SLC6A4P31645 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SLC6A4P31645 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.02■□□□□ 0.32
SLC6A4P31645 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
SLC6A4P31645 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
SLC6A4P31645 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SLC6A4P31645 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SLC6A4P31645 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SLC6A4P31645 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
SLC6A4P31645 AL645939.2-201ENST00000427340 991 ntBASIC17.02■□□□□ 0.32
SLC6A4P31645 SPDYE14P-201ENST00000442619 822 ntBASIC17.02■□□□□ 0.32
SLC6A4P31645 AC105233.2-201ENST00000523697 349 ntBASIC17.02■□□□□ 0.32
SLC6A4P31645 AF228730.5-201ENST00000530288 346 ntBASIC17.02■□□□□ 0.32
SLC6A4P31645 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
SLC6A4P31645 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.02■□□□□ 0.32
SLC6A4P31645 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.02■□□□□ 0.32
SLC6A4P31645 AC026150.2-201ENST00000564693 1156 ntBASIC17.02■□□□□ 0.32
SLC6A4P31645 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.02■□□□□ 0.32
SLC6A4P31645 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.02■□□□□ 0.32
SLC6A4P31645 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SLC6A4P31645 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SLC6A4P31645 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SLC6A4P31645 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.02■□□□□ 0.31
SLC6A4P31645 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.02■□□□□ 0.31
SLC6A4P31645 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.02■□□□□ 0.31
SLC6A4P31645 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.02■□□□□ 0.31
SLC6A4P31645 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SLC6A4P31645 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC6A4P31645 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC6A4P31645 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC6A4P31645 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC6A4P31645 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC6A4P31645 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC6A4P31645 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SLC6A4P31645 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
SLC6A4P31645 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC6A4P31645 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SLC6A4P31645 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
SLC6A4P31645 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SLC6A4P31645 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.01■□□□□ 0.31
SLC6A4P31645 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC6A4P31645 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.01■□□□□ 0.31
SLC6A4P31645 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
SLC6A4P31645 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.01■□□□□ 0.31
SLC6A4P31645 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.01■□□□□ 0.31
SLC6A4P31645 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
SLC6A4P31645 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.01■□□□□ 0.31
SLC6A4P31645 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.01■□□□□ 0.31
SLC6A4P31645 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
SLC6A4P31645 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.01■□□□□ 0.31
SLC6A4P31645 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.01■□□□□ 0.31
SLC6A4P31645 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
SLC6A4P31645 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SLC6A4P31645 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SLC6A4P31645 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.01■□□□□ 0.31
SLC6A4P31645 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC6A4P31645 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SLC6A4P31645 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC6A4P31645 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SLC6A4P31645 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
SLC6A4P31645 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC6A4P31645 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SLC6A4P31645 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
SLC6A4P31645 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SLC6A4P31645 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17■□□□□ 0.31
SLC6A4P31645 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17■□□□□ 0.31
SLC6A4P31645 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms