Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HOXC9P31274 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HOXC9P31274 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
HOXC9P31274 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
HOXC9P31274 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HOXC9P31274 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC21.81■■□□□ 1.08
HOXC9P31274 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HOXC9P31274 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HOXC9P31274 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HOXC9P31274 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HOXC9P31274 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HOXC9P31274 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC21.8■■□□□ 1.08
HOXC9P31274 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HOXC9P31274 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HOXC9P31274 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC21.8■■□□□ 1.08
HOXC9P31274 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
HOXC9P31274 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HOXC9P31274 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HOXC9P31274 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
HOXC9P31274 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HOXC9P31274 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC21.8■■□□□ 1.08
HOXC9P31274 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
HOXC9P31274 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HOXC9P31274 AC093004.1-201ENST00000508850 424 ntBASIC21.8■■□□□ 1.08
HOXC9P31274 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HOXC9P31274 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC21.8■■□□□ 1.08
HOXC9P31274 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC21.8■■□□□ 1.08
HOXC9P31274 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC21.8■■□□□ 1.08
HOXC9P31274 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
HOXC9P31274 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
HOXC9P31274 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC21.8■■□□□ 1.08
HOXC9P31274 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC21.8■■□□□ 1.08
HOXC9P31274 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HOXC9P31274 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
HOXC9P31274 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HOXC9P31274 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
HOXC9P31274 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC21.79■■□□□ 1.08
HOXC9P31274 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC21.79■■□□□ 1.08
HOXC9P31274 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HOXC9P31274 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC21.79■■□□□ 1.08
HOXC9P31274 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
HOXC9P31274 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HOXC9P31274 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HOXC9P31274 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HOXC9P31274 AC098614.1-201ENST00000368528 745 ntBASIC21.79■■□□□ 1.08
HOXC9P31274 PGF-202ENST00000405431 666 ntTSL 5 BASIC21.79■■□□□ 1.08
HOXC9P31274 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
HOXC9P31274 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
HOXC9P31274 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC21.79■■□□□ 1.08
HOXC9P31274 CD81-207ENST00000481687 890 ntTSL 2 BASIC21.79■■□□□ 1.08
HOXC9P31274 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HOXC9P31274 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC21.79■■□□□ 1.08
HOXC9P31274 SRD5A3P1-201ENST00000603021 949 ntBASIC21.79■■□□□ 1.08
HOXC9P31274 AC004461.2-201ENST00000629517 803 ntBASIC21.79■■□□□ 1.08
HOXC9P31274 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
HOXC9P31274 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HOXC9P31274 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC21.79■■□□□ 1.08
HOXC9P31274 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC21.79■■□□□ 1.08
HOXC9P31274 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HOXC9P31274 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
HOXC9P31274 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC21.79■■□□□ 1.08
HOXC9P31274 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HOXC9P31274 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC21.79■■□□□ 1.08
HOXC9P31274 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HOXC9P31274 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
HOXC9P31274 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HOXC9P31274 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
HOXC9P31274 EML3-217ENST00000531557 2509 ntTSL 5 BASIC21.78■■□□□ 1.08
HOXC9P31274 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HOXC9P31274 AL645608.8-201ENST00000606034 2086 ntBASIC21.78■■□□□ 1.08
HOXC9P31274 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
HOXC9P31274 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
HOXC9P31274 AL589987.1-201ENST00000453380 819 ntBASIC21.78■■□□□ 1.08
HOXC9P31274 INE1-201ENST00000456273 945 ntBASIC21.78■■□□□ 1.08
HOXC9P31274 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
HOXC9P31274 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC21.78■■□□□ 1.08
HOXC9P31274 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC21.78■■□□□ 1.08
HOXC9P31274 AC008494.3-201ENST00000606615 944 ntBASIC21.78■■□□□ 1.08
HOXC9P31274 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HOXC9P31274 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC21.78■■□□□ 1.08
HOXC9P31274 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
HOXC9P31274 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC21.77■■□□□ 1.08
HOXC9P31274 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC21.77■■□□□ 1.08
HOXC9P31274 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC21.77■■□□□ 1.08
HOXC9P31274 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC21.77■■□□□ 1.08
HOXC9P31274 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC21.77■■□□□ 1.08
HOXC9P31274 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
HOXC9P31274 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
HOXC9P31274 SLC7A15P-201ENST00000424028 1363 ntBASIC21.77■■□□□ 1.08
HOXC9P31274 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC21.77■■□□□ 1.08
HOXC9P31274 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
HOXC9P31274 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HOXC9P31274 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
HOXC9P31274 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HOXC9P31274 AC087499.6-201ENST00000411576 835 ntBASIC21.77■■□□□ 1.08
HOXC9P31274 ARSEP1-201ENST00000420443 635 ntBASIC21.77■■□□□ 1.08
HOXC9P31274 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC21.77■■□□□ 1.08
HOXC9P31274 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC21.77■■□□□ 1.08
HOXC9P31274 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC21.77■■□□□ 1.08
HOXC9P31274 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms