Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGA1P17096 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGA1P17096 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
HMGA1P17096 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
HMGA1P17096 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGA1P17096 CETN4P-206ENST00000642099 2168 ntBASIC17.12■□□□□ 0.33
HMGA1P17096 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGA1P17096 PCGF3-213ENST00000620529 1899 ntBASIC17.12■□□□□ 0.33
HMGA1P17096 AC022144.1-201ENST00000602255 1580 ntBASIC17.12■□□□□ 0.33
HMGA1P17096 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
HMGA1P17096 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
HMGA1P17096 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGA1P17096 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGA1P17096 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGA1P17096 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.12■□□□□ 0.33
HMGA1P17096 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGA1P17096 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGA1P17096 AC009477.1-201ENST00000452936 217 ntBASIC17.12■□□□□ 0.33
HMGA1P17096 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGA1P17096 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGA1P17096 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGA1P17096 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.12■□□□□ 0.33
HMGA1P17096 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HMGA1P17096 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
HMGA1P17096 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGA1P17096 GGT3P-204ENST00000453783 1664 ntBASIC17.12■□□□□ 0.33
HMGA1P17096 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGA1P17096 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGA1P17096 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGA1P17096 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGA1P17096 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGA1P17096 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGA1P17096 AC012313.1-201ENST00000593393 3059 ntBASIC17.12■□□□□ 0.33
HMGA1P17096 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
HMGA1P17096 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGA1P17096 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGA1P17096 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
HMGA1P17096 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGA1P17096 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGA1P17096 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGA1P17096 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGA1P17096 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
HMGA1P17096 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.11■□□□□ 0.33
HMGA1P17096 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
HMGA1P17096 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGA1P17096 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGA1P17096 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGA1P17096 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
HMGA1P17096 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGA1P17096 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGA1P17096 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGA1P17096 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGA1P17096 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HMGA1P17096 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGA1P17096 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.11■□□□□ 0.33
HMGA1P17096 SERBP1P5-201ENST00000510079 1181 ntBASIC17.11■□□□□ 0.33
HMGA1P17096 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.11■□□□□ 0.33
HMGA1P17096 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC17.11■□□□□ 0.33
HMGA1P17096 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGA1P17096 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC17.11■□□□□ 0.33
HMGA1P17096 AL079307.3-201ENST00000556114 283 ntBASIC17.11■□□□□ 0.33
HMGA1P17096 AC009407.1-201ENST00000568958 598 ntBASIC17.11■□□□□ 0.33
HMGA1P17096 AC024267.1-201ENST00000582320 895 ntBASIC17.11■□□□□ 0.33
HMGA1P17096 AL844908.2-201ENST00000609461 460 ntBASIC17.11■□□□□ 0.33
HMGA1P17096 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
HMGA1P17096 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGA1P17096 HLA-A-202ENST00000376806 1854 ntBASIC17.11■□□□□ 0.33
HMGA1P17096 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGA1P17096 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGA1P17096 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HMGA1P17096 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGA1P17096 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.11■□□□□ 0.33
HMGA1P17096 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.11■□□□□ 0.33
HMGA1P17096 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGA1P17096 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
HMGA1P17096 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
HMGA1P17096 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HMGA1P17096 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGA1P17096 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.1■□□□□ 0.33
HMGA1P17096 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HMGA1P17096 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HMGA1P17096 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGA1P17096 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.1■□□□□ 0.33
HMGA1P17096 AL080243.2-201ENST00000418783 582 ntBASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms