Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
HMGB1P09429 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
HMGB1P09429 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB1P09429 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB1P09429 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB1P09429 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB1P09429 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB1P09429 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB1P09429 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB1P09429 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB1P09429 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC19.6■□□□□ 0.73
HMGB1P09429 AC140658.5-201ENST00000438532 169 ntBASIC19.6■□□□□ 0.73
HMGB1P09429 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
HMGB1P09429 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC19.6■□□□□ 0.73
HMGB1P09429 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.6■□□□□ 0.73
HMGB1P09429 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC19.6■□□□□ 0.73
HMGB1P09429 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB1P09429 AC106730.1-201ENST00000566722 1090 ntBASIC19.6■□□□□ 0.73
HMGB1P09429 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
HMGB1P09429 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGB1P09429 AL009183.1-201ENST00000603760 355 ntBASIC19.6■□□□□ 0.73
HMGB1P09429 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGB1P09429 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGB1P09429 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGB1P09429 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
HMGB1P09429 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB1P09429 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB1P09429 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB1P09429 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGB1P09429 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB1P09429 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB1P09429 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB1P09429 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGB1P09429 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB1P09429 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB1P09429 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB1P09429 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB1P09429 AC025580.3-201ENST00000617932 1424 ntBASIC19.59■□□□□ 0.73
HMGB1P09429 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
HMGB1P09429 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.59■□□□□ 0.73
HMGB1P09429 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.59■□□□□ 0.73
HMGB1P09429 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB1P09429 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
HMGB1P09429 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB1P09429 BCAR1-209ENST00000546196 1340 ntBASIC19.59■□□□□ 0.73
HMGB1P09429 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB1P09429 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB1P09429 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC19.59■□□□□ 0.73
HMGB1P09429 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB1P09429 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC19.59■□□□□ 0.73
HMGB1P09429 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB1P09429 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
HMGB1P09429 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB1P09429 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC19.59■□□□□ 0.73
HMGB1P09429 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC19.59■□□□□ 0.73
HMGB1P09429 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.59■□□□□ 0.73
HMGB1P09429 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB1P09429 HS6ST1P1-201ENST00000481504 1234 ntBASIC19.59■□□□□ 0.73
HMGB1P09429 KRT19P2-202ENST00000557173 1012 ntBASIC19.59■□□□□ 0.73
HMGB1P09429 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.59■□□□□ 0.73
HMGB1P09429 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB1P09429 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB1P09429 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.59■□□□□ 0.73
HMGB1P09429 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB1P09429 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB1P09429 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
HMGB1P09429 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB1P09429 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.59■□□□□ 0.73
HMGB1P09429 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
HMGB1P09429 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.59■□□□□ 0.73
HMGB1P09429 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
HMGB1P09429 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
HMGB1P09429 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.59■□□□□ 0.73
HMGB1P09429 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
HMGB1P09429 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB1P09429 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB1P09429 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB1P09429 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB1P09429 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB1P09429 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC19.59■□□□□ 0.73
HMGB1P09429 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC19.59■□□□□ 0.73
HMGB1P09429 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
HMGB1P09429 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB1P09429 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC19.58■□□□□ 0.73
HMGB1P09429 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGB1P09429 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGB1P09429 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGB1P09429 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGB1P09429 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGB1P09429 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGB1P09429 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
HMGB1P09429 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGB1P09429 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC19.58■□□□□ 0.73
HMGB1P09429 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGB1P09429 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGB1P09429 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.58■□□□□ 0.73
HMGB1P09429 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
HMGB1P09429 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HMGB1P09429 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HMGB1P09429 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms