Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
CTDNEP1O95476 MED16-214ENST00000617672 554 ntTSL 5 BASIC19.22■□□□□ 0.67
CTDNEP1O95476 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC19.22■□□□□ 0.67
CTDNEP1O95476 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTDNEP1O95476 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CTDNEP1O95476 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC19.22■□□□□ 0.67
CTDNEP1O95476 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTDNEP1O95476 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTDNEP1O95476 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CTDNEP1O95476 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTDNEP1O95476 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTDNEP1O95476 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.21■□□□□ 0.67
CTDNEP1O95476 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC19.21■□□□□ 0.67
CTDNEP1O95476 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC19.21■□□□□ 0.67
CTDNEP1O95476 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CTDNEP1O95476 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTDNEP1O95476 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTDNEP1O95476 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CTDNEP1O95476 AC140658.5-201ENST00000438532 169 ntBASIC19.21■□□□□ 0.67
CTDNEP1O95476 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC19.21■□□□□ 0.67
CTDNEP1O95476 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CTDNEP1O95476 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CTDNEP1O95476 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC19.21■□□□□ 0.67
CTDNEP1O95476 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC19.21■□□□□ 0.67
CTDNEP1O95476 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC19.21■□□□□ 0.67
CTDNEP1O95476 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC19.21■□□□□ 0.67
CTDNEP1O95476 AC120114.3-201ENST00000611923 658 ntBASIC19.21■□□□□ 0.67
CTDNEP1O95476 AC007064.4-201ENST00000637740 555 ntBASIC19.21■□□□□ 0.67
CTDNEP1O95476 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTDNEP1O95476 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CTDNEP1O95476 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTDNEP1O95476 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CTDNEP1O95476 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTDNEP1O95476 SP100-205ENST00000409824 1802 ntTSL 5 BASIC19.21■□□□□ 0.67
CTDNEP1O95476 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTDNEP1O95476 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDNEP1O95476 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDNEP1O95476 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDNEP1O95476 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTDNEP1O95476 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC19.2■□□□□ 0.66
CTDNEP1O95476 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.2■□□□□ 0.66
CTDNEP1O95476 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDNEP1O95476 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTDNEP1O95476 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDNEP1O95476 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTDNEP1O95476 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDNEP1O95476 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDNEP1O95476 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDNEP1O95476 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC19.2■□□□□ 0.66
CTDNEP1O95476 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC19.2■□□□□ 0.66
CTDNEP1O95476 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC19.2■□□□□ 0.66
CTDNEP1O95476 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC19.2■□□□□ 0.66
CTDNEP1O95476 CD63-210ENST00000550776 870 ntTSL 5 BASIC19.2■□□□□ 0.66
CTDNEP1O95476 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC19.2■□□□□ 0.66
CTDNEP1O95476 PIN1-206ENST00000587625 878 ntTSL 2 BASIC19.2■□□□□ 0.66
CTDNEP1O95476 AC140113.2-201ENST00000604370 208 ntBASIC19.2■□□□□ 0.66
CTDNEP1O95476 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
CTDNEP1O95476 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CTDNEP1O95476 CICP6-201ENST00000457191 2729 ntBASIC19.2■□□□□ 0.66
CTDNEP1O95476 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDNEP1O95476 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC19.2■□□□□ 0.66
CTDNEP1O95476 RELA-227ENST00000615805 2236 ntTSL 5 BASIC19.2■□□□□ 0.66
CTDNEP1O95476 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC19.2■□□□□ 0.66
CTDNEP1O95476 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDNEP1O95476 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTDNEP1O95476 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTDNEP1O95476 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTDNEP1O95476 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTDNEP1O95476 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTDNEP1O95476 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTDNEP1O95476 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTDNEP1O95476 AC010491.1-201ENST00000563101 2797 ntBASIC19.19■□□□□ 0.66
CTDNEP1O95476 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTDNEP1O95476 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTDNEP1O95476 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTDNEP1O95476 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 VMO1-203ENST00000416307 712 ntTSL 2 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTDNEP1O95476 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTDNEP1O95476 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTDNEP1O95476 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTDNEP1O95476 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CTDNEP1O95476 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms