Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDB3O75112 PMS2P4-201ENST00000412466 1052 ntBASIC15.65■□□□□ 0.1
LDB3O75112 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.65■□□□□ 0.1
LDB3O75112 MTDHP5-201ENST00000598980 586 ntBASIC15.65■□□□□ 0.1
LDB3O75112 AL078644.1-201ENST00000609881 752 ntBASIC15.65■□□□□ 0.1
LDB3O75112 AC091812.2-201ENST00000619081 385 ntBASIC15.65■□□□□ 0.1
LDB3O75112 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.65■□□□□ 0.1
LDB3O75112 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
LDB3O75112 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDB3O75112 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
LDB3O75112 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.65■□□□□ 0.1
LDB3O75112 GGT4P-201ENST00000623672 1708 ntBASIC15.65■□□□□ 0.1
LDB3O75112 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15.65■□□□□ 0.1
LDB3O75112 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDB3O75112 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDB3O75112 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDB3O75112 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDB3O75112 AC005052.1-201ENST00000625181 2492 ntBASIC15.65■□□□□ 0.1
LDB3O75112 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
LDB3O75112 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
LDB3O75112 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
LDB3O75112 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
LDB3O75112 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
LDB3O75112 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.64■□□□□ 0.09
LDB3O75112 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.64■□□□□ 0.09
LDB3O75112 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.64■□□□□ 0.09
LDB3O75112 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.64■□□□□ 0.09
LDB3O75112 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.64■□□□□ 0.09
LDB3O75112 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.64■□□□□ 0.09
LDB3O75112 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.64■□□□□ 0.09
LDB3O75112 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
LDB3O75112 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.64■□□□□ 0.09
LDB3O75112 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
LDB3O75112 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.64■□□□□ 0.09
LDB3O75112 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
LDB3O75112 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.64■□□□□ 0.09
LDB3O75112 BX842568.4-201ENST00000421222 227 ntBASIC15.64■□□□□ 0.09
LDB3O75112 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.64■□□□□ 0.09
LDB3O75112 FAM58CP-201ENST00000435741 640 ntBASIC15.64■□□□□ 0.09
LDB3O75112 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.64■□□□□ 0.09
LDB3O75112 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.64■□□□□ 0.09
LDB3O75112 AC092865.5-201ENST00000545435 363 ntBASIC15.64■□□□□ 0.09
LDB3O75112 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.64■□□□□ 0.09
LDB3O75112 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.64■□□□□ 0.09
LDB3O75112 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
LDB3O75112 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.64■□□□□ 0.09
LDB3O75112 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 AC124067.4-201ENST00000519691 2379 ntBASIC15.64■□□□□ 0.09
LDB3O75112 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
LDB3O75112 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.64■□□□□ 0.09
LDB3O75112 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDB3O75112 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
LDB3O75112 AL662844.4-201ENST00000606367 2838 ntBASIC15.63■□□□□ 0.09
LDB3O75112 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.63■□□□□ 0.09
LDB3O75112 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.63■□□□□ 0.09
LDB3O75112 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
LDB3O75112 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.63■□□□□ 0.09
LDB3O75112 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
LDB3O75112 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.63■□□□□ 0.09
LDB3O75112 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 ALG1L5P-201ENST00000482043 771 ntBASIC15.63■□□□□ 0.09
LDB3O75112 AC112191.1-201ENST00000523689 701 ntBASIC15.63■□□□□ 0.09
LDB3O75112 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.63■□□□□ 0.09
LDB3O75112 MIR3909-201ENST00000579518 119 ntBASIC15.63■□□□□ 0.09
LDB3O75112 AC010327.4-202ENST00000591484 748 ntBASIC15.63■□□□□ 0.09
LDB3O75112 AC021097.1-201ENST00000607902 574 ntBASIC15.63■□□□□ 0.09
LDB3O75112 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.63■□□□□ 0.09
LDB3O75112 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms