Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 KRT8P49-201ENST00000604166 1432 ntBASIC20.92■□□□□ 0.94
NPHP1O15259 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP1O15259 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP1O15259 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
NPHP1O15259 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP1O15259 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC20.92■□□□□ 0.94
NPHP1O15259 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP1O15259 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP1O15259 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
NPHP1O15259 AC068880.1-201ENST00000507289 2297 ntBASIC20.92■□□□□ 0.94
NPHP1O15259 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP1O15259 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP1O15259 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP1O15259 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP1O15259 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP1O15259 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP1O15259 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP1O15259 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC20.91■□□□□ 0.94
NPHP1O15259 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP1O15259 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP1O15259 HLA-H-201ENST00000383620 1096 ntBASIC20.91■□□□□ 0.94
NPHP1O15259 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP1O15259 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC20.91■□□□□ 0.94
NPHP1O15259 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP1O15259 TSSK5P-201ENST00000423978 907 ntBASIC20.91■□□□□ 0.94
NPHP1O15259 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP1O15259 SATB1-217ENST00000493952 626 ntTSL 3 BASIC20.91■□□□□ 0.94
NPHP1O15259 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP1O15259 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
NPHP1O15259 SSH2-210ENST00000582084 560 ntTSL 3 BASIC20.91■□□□□ 0.94
NPHP1O15259 AL359881.2-201ENST00000602973 570 ntBASIC20.91■□□□□ 0.94
NPHP1O15259 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP1O15259 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC20.91■□□□□ 0.94
NPHP1O15259 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP1O15259 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
NPHP1O15259 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP1O15259 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP1O15259 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP1O15259 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC20.9■□□□□ 0.94
NPHP1O15259 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP1O15259 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
NPHP1O15259 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP1O15259 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.9■□□□□ 0.94
NPHP1O15259 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
NPHP1O15259 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP1O15259 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
NPHP1O15259 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC20.9■□□□□ 0.94
NPHP1O15259 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP1O15259 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP1O15259 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP1O15259 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC20.9■□□□□ 0.94
NPHP1O15259 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP1O15259 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC20.9■□□□□ 0.94
NPHP1O15259 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC20.9■□□□□ 0.94
NPHP1O15259 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC20.9■□□□□ 0.94
NPHP1O15259 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP1O15259 PRYP6-201ENST00000514804 343 ntBASIC20.9■□□□□ 0.94
NPHP1O15259 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP1O15259 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC20.9■□□□□ 0.94
NPHP1O15259 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC20.9■□□□□ 0.94
NPHP1O15259 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC20.9■□□□□ 0.94
NPHP1O15259 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC20.9■□□□□ 0.94
NPHP1O15259 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP1O15259 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
NPHP1O15259 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.9■□□□□ 0.94
NPHP1O15259 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC20.9■□□□□ 0.94
NPHP1O15259 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP1O15259 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP1O15259 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP1O15259 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
NPHP1O15259 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP1O15259 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
NPHP1O15259 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC20.89■□□□□ 0.94
NPHP1O15259 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
NPHP1O15259 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP1O15259 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP1O15259 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP1O15259 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP1O15259 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP1O15259 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP1O15259 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
NPHP1O15259 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP1O15259 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP1O15259 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP1O15259 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP1O15259 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP1O15259 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC20.89■□□□□ 0.93
NPHP1O15259 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP1O15259 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC20.89■□□□□ 0.93
NPHP1O15259 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP1O15259 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NPHP1O15259 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC20.89■□□□□ 0.93
NPHP1O15259 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC20.89■□□□□ 0.93
NPHP1O15259 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC20.89■□□□□ 0.93
NPHP1O15259 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
NPHP1O15259 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
NPHP1O15259 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC20.88■□□□□ 0.93
NPHP1O15259 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
NPHP1O15259 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC20.88■□□□□ 0.93
NPHP1O15259 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms