Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC188H7C350 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC188H7C350 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
CCDC188H7C350 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC188H7C350 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC188H7C350 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC188H7C350 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC188H7C350 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC188H7C350 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC188H7C350 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
CCDC188H7C350 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CCDC188H7C350 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.34■□□□□ 0.37
CCDC188H7C350 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 NCF1C-201ENST00000438382 1427 ntBASIC17.34■□□□□ 0.37
CCDC188H7C350 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC188H7C350 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CCDC188H7C350 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
CCDC188H7C350 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 DUX4L26-201ENST00000489078 1255 ntBASIC17.34■□□□□ 0.37
CCDC188H7C350 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC188H7C350 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC188H7C350 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC188H7C350 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC188H7C350 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CCDC188H7C350 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC188H7C350 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC188H7C350 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC17.33■□□□□ 0.37
CCDC188H7C350 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.37
CCDC188H7C350 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC188H7C350 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC188H7C350 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC188H7C350 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC188H7C350 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
CCDC188H7C350 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC188H7C350 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC188H7C350 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC188H7C350 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC188H7C350 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC188H7C350 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC188H7C350 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC188H7C350 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
CCDC188H7C350 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC188H7C350 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CCDC188H7C350 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC188H7C350 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC188H7C350 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.33■□□□□ 0.36
CCDC188H7C350 PAWRP1-201ENST00000451083 565 ntBASIC17.33■□□□□ 0.36
CCDC188H7C350 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC188H7C350 TOB2P1-201ENST00000469761 992 ntBASIC17.33■□□□□ 0.36
CCDC188H7C350 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.33■□□□□ 0.36
CCDC188H7C350 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC188H7C350 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC188H7C350 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.33■□□□□ 0.36
CCDC188H7C350 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC188H7C350 AC091167.2-201ENST00000579581 588 ntBASIC17.33■□□□□ 0.36
CCDC188H7C350 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CCDC188H7C350 AL121956.5-201ENST00000625261 221 ntBASIC17.33■□□□□ 0.36
CCDC188H7C350 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC188H7C350 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC188H7C350 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
CCDC188H7C350 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC188H7C350 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC188H7C350 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC188H7C350 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
CCDC188H7C350 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC188H7C350 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.33■□□□□ 0.36
CCDC188H7C350 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC188H7C350 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.33■□□□□ 0.36
CCDC188H7C350 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC188H7C350 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC188H7C350 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC188H7C350 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
CCDC188H7C350 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC188H7C350 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC188H7C350 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CCDC188H7C350 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC188H7C350 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC188H7C350 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CCDC188H7C350 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC188H7C350 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC188H7C350 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC188H7C350 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC188H7C350 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms