Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 PCDHB19P-201ENST00000570871 2371 ntBASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.62■□□□□ 0.57
COL4A3BPQ9Y5P4 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 AC006538.1-201ENST00000567905 1585 ntBASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
COL4A3BPQ9Y5P4 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 CNN2P11-201ENST00000429351 262 ntBASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 WT1-AS_2.1-201ENST00000613208 137 ntBASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 HLA-A-202ENST00000376806 1854 ntBASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A3BPQ9Y5P4 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.59■□□□□ 0.57
COL4A3BPQ9Y5P4 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.59■□□□□ 0.57
COL4A3BPQ9Y5P4 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A3BPQ9Y5P4 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A3BPQ9Y5P4 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A3BPQ9Y5P4 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A3BPQ9Y5P4 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC18.59■□□□□ 0.57
COL4A3BPQ9Y5P4 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.59■□□□□ 0.57
COL4A3BPQ9Y5P4 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A3BPQ9Y5P4 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A3BPQ9Y5P4 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A3BPQ9Y5P4 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A3BPQ9Y5P4 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A3BPQ9Y5P4 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A3BPQ9Y5P4 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.59■□□□□ 0.57
COL4A3BPQ9Y5P4 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms