Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 AL031055.1-201ENST00000606362 631 ntBASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 AC006538.3-201ENST00000612495 578 ntBASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 AC055717.3-201ENST00000622967 595 ntBASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 AC092902.6-201ENST00000641783 218 ntBASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRIM39Q9HCM9 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 MIR4469-201ENST00000583919 79 ntBASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 AC139530.3-201ENST00000620344 690 ntBASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 AL161645.1-201ENST00000622716 1255 ntBASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRIM39Q9HCM9 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 AC211486.1-202ENST00000416371 468 ntBASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 CEND1P1-201ENST00000451006 455 ntBASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM39Q9HCM9 AC211476.1-201ENST00000503899 468 ntBASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms