Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 LITAF-220ENST00000620789 692 ntTSL 5 BASIC14.79□□□□□ -0.04
MMP28Q9H239 AP000550.4-202ENST00000639755 178 ntBASIC14.79□□□□□ -0.04
MMP28Q9H239 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MMP28Q9H239 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
MMP28Q9H239 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
MMP28Q9H239 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MMP28Q9H239 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
MMP28Q9H239 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.79□□□□□ -0.04
MMP28Q9H239 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.78□□□□□ -0.04
MMP28Q9H239 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
MMP28Q9H239 AL603832.2-201ENST00000566195 2125 ntBASIC14.78□□□□□ -0.04
MMP28Q9H239 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC14.78□□□□□ -0.04
MMP28Q9H239 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.78□□□□□ -0.04
MMP28Q9H239 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
MMP28Q9H239 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
MMP28Q9H239 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.78□□□□□ -0.04
MMP28Q9H239 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
MMP28Q9H239 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
MMP28Q9H239 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 PCED1CP-201ENST00000419887 785 ntBASIC14.78□□□□□ -0.04
MMP28Q9H239 LY6E-213ENST00000522528 606 ntTSL 3 BASIC14.78□□□□□ -0.04
MMP28Q9H239 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
MMP28Q9H239 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC14.78□□□□□ -0.04
MMP28Q9H239 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC14.78□□□□□ -0.04
MMP28Q9H239 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC14.78□□□□□ -0.04
MMP28Q9H239 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC14.78□□□□□ -0.04
MMP28Q9H239 HYMAI.1-201ENST00000620949 238 ntBASIC14.78□□□□□ -0.04
MMP28Q9H239 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC14.78□□□□□ -0.04
MMP28Q9H239 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC14.78□□□□□ -0.04
MMP28Q9H239 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC14.78□□□□□ -0.04
MMP28Q9H239 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
MMP28Q9H239 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.78□□□□□ -0.04
MMP28Q9H239 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MMP28Q9H239 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC14.78□□□□□ -0.04
MMP28Q9H239 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.78□□□□□ -0.04
MMP28Q9H239 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.78□□□□□ -0.04
MMP28Q9H239 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
MMP28Q9H239 AL365209.1-201ENST00000624418 6473 ntBASIC14.77□□□□□ -0.04
MMP28Q9H239 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
MMP28Q9H239 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
MMP28Q9H239 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.77□□□□□ -0.04
MMP28Q9H239 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
MMP28Q9H239 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
MMP28Q9H239 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
MMP28Q9H239 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
MMP28Q9H239 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC14.77□□□□□ -0.04
MMP28Q9H239 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
MMP28Q9H239 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC14.77□□□□□ -0.04
MMP28Q9H239 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC14.77□□□□□ -0.04
MMP28Q9H239 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC14.77□□□□□ -0.05
MMP28Q9H239 MIR662-201ENST00000384847 95 ntBASIC14.77□□□□□ -0.05
MMP28Q9H239 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MMP28Q9H239 AC005104.2-201ENST00000427818 678 ntBASIC14.77□□□□□ -0.05
MMP28Q9H239 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
MMP28Q9H239 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC14.77□□□□□ -0.05
MMP28Q9H239 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC14.77□□□□□ -0.05
MMP28Q9H239 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC14.77□□□□□ -0.05
MMP28Q9H239 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC14.77□□□□□ -0.05
MMP28Q9H239 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC14.77□□□□□ -0.05
MMP28Q9H239 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.77□□□□□ -0.05
MMP28Q9H239 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
MMP28Q9H239 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MMP28Q9H239 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
MMP28Q9H239 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
MMP28Q9H239 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC14.77□□□□□ -0.05
MMP28Q9H239 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.77□□□□□ -0.05
MMP28Q9H239 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
MMP28Q9H239 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.77□□□□□ -0.05
MMP28Q9H239 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.77□□□□□ -0.05
MMP28Q9H239 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
MMP28Q9H239 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC14.77□□□□□ -0.05
MMP28Q9H239 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.77□□□□□ -0.05
MMP28Q9H239 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MMP28Q9H239 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.77□□□□□ -0.05
MMP28Q9H239 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
MMP28Q9H239 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
MMP28Q9H239 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MMP28Q9H239 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms