Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 CNN2P2-201ENST00000443536 909 ntBASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 CNN2P3-201ENST00000450201 906 ntBASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 IGHV3-62-201ENST00000520057 340 ntBASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 AC011467.4-201ENST00000594891 528 ntBASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 CYP2A7P1-201ENST00000595391 815 ntBASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 AL096865.1-201ENST00000606796 927 ntBASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 AC021097.1-201ENST00000607902 574 ntBASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 AL136317.3-201ENST00000618497 906 ntBASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 Z92544.3-201ENST00000624747 417 ntBASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 HNRNPFP1-201ENST00000391730 1133 ntBASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 VPS29-207ENST00000549970 818 ntTSL 3 BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAIPQ9BWF2 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 LINC00895-201ENST00000629028 1637 ntBASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms