Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.26■□□□□ 0.19
VRK3Q8IV63 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.26■□□□□ 0.19
VRK3Q8IV63 AC021097.1-201ENST00000607902 574 ntBASIC16.26■□□□□ 0.19
VRK3Q8IV63 AL078644.1-201ENST00000609881 752 ntBASIC16.26■□□□□ 0.19
VRK3Q8IV63 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.26■□□□□ 0.19
VRK3Q8IV63 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
VRK3Q8IV63 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
VRK3Q8IV63 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.26■□□□□ 0.19
VRK3Q8IV63 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.26■□□□□ 0.19
VRK3Q8IV63 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.26■□□□□ 0.19
VRK3Q8IV63 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
VRK3Q8IV63 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 ME2P1-201ENST00000426028 1970 ntBASIC16.26■□□□□ 0.19
VRK3Q8IV63 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.26■□□□□ 0.19
VRK3Q8IV63 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
VRK3Q8IV63 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VRK3Q8IV63 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VRK3Q8IV63 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
VRK3Q8IV63 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VRK3Q8IV63 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VRK3Q8IV63 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
VRK3Q8IV63 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VRK3Q8IV63 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VRK3Q8IV63 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
VRK3Q8IV63 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.25■□□□□ 0.19
VRK3Q8IV63 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.25■□□□□ 0.19
VRK3Q8IV63 ALG1L5P-201ENST00000482043 771 ntBASIC16.25■□□□□ 0.19
VRK3Q8IV63 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.25■□□□□ 0.19
VRK3Q8IV63 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
VRK3Q8IV63 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.25■□□□□ 0.19
VRK3Q8IV63 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.25■□□□□ 0.19
VRK3Q8IV63 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.25■□□□□ 0.19
VRK3Q8IV63 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VRK3Q8IV63 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
VRK3Q8IV63 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.25■□□□□ 0.19
VRK3Q8IV63 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VRK3Q8IV63 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VRK3Q8IV63 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VRK3Q8IV63 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.25■□□□□ 0.19
VRK3Q8IV63 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
VRK3Q8IV63 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VRK3Q8IV63 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.25■□□□□ 0.19
VRK3Q8IV63 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.25■□□□□ 0.19
VRK3Q8IV63 PCGF3-213ENST00000620529 1899 ntBASIC16.25■□□□□ 0.19
VRK3Q8IV63 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VRK3Q8IV63 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.24■□□□□ 0.19
VRK3Q8IV63 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VRK3Q8IV63 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
VRK3Q8IV63 AC016027.1-202ENST00000607927 1699 ntBASIC16.24■□□□□ 0.19
VRK3Q8IV63 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VRK3Q8IV63 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VRK3Q8IV63 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VRK3Q8IV63 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
VRK3Q8IV63 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
VRK3Q8IV63 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
VRK3Q8IV63 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.24■□□□□ 0.19
VRK3Q8IV63 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VRK3Q8IV63 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.24■□□□□ 0.19
VRK3Q8IV63 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
VRK3Q8IV63 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.24■□□□□ 0.19
VRK3Q8IV63 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
VRK3Q8IV63 FAM58CP-201ENST00000435741 640 ntBASIC16.24■□□□□ 0.19
VRK3Q8IV63 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.24■□□□□ 0.19
VRK3Q8IV63 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.24■□□□□ 0.19
VRK3Q8IV63 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
VRK3Q8IV63 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.24■□□□□ 0.19
VRK3Q8IV63 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.24■□□□□ 0.19
VRK3Q8IV63 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
VRK3Q8IV63 AC092902.6-201ENST00000641783 218 ntBASIC16.24■□□□□ 0.19
VRK3Q8IV63 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VRK3Q8IV63 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VRK3Q8IV63 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VRK3Q8IV63 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VRK3Q8IV63 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
VRK3Q8IV63 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
VRK3Q8IV63 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.24■□□□□ 0.19
VRK3Q8IV63 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VRK3Q8IV63 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VRK3Q8IV63 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VRK3Q8IV63 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VRK3Q8IV63 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VRK3Q8IV63 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VRK3Q8IV63 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
VRK3Q8IV63 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.23■□□□□ 0.19
VRK3Q8IV63 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
VRK3Q8IV63 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VRK3Q8IV63 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VRK3Q8IV63 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.23■□□□□ 0.19
VRK3Q8IV63 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VRK3Q8IV63 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.23■□□□□ 0.19
VRK3Q8IV63 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
VRK3Q8IV63 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VRK3Q8IV63 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms