Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.94■□□□□ 0.3
USP39Q53GS9 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP39Q53GS9 SPDYE14P-201ENST00000442619 822 ntBASIC16.94■□□□□ 0.3
USP39Q53GS9 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.94■□□□□ 0.3
USP39Q53GS9 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.94■□□□□ 0.3
USP39Q53GS9 UGT1A2P-201ENST00000454886 866 ntBASIC16.94■□□□□ 0.3
USP39Q53GS9 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.94■□□□□ 0.3
USP39Q53GS9 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.94■□□□□ 0.3
USP39Q53GS9 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.94■□□□□ 0.3
USP39Q53GS9 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
USP39Q53GS9 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.94■□□□□ 0.3
USP39Q53GS9 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP39Q53GS9 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.94■□□□□ 0.3
USP39Q53GS9 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.94■□□□□ 0.3
USP39Q53GS9 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.94■□□□□ 0.3
USP39Q53GS9 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
USP39Q53GS9 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
USP39Q53GS9 FER1L4-210ENST00000615531 5998 ntBASIC16.94■□□□□ 0.3
USP39Q53GS9 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP39Q53GS9 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
USP39Q53GS9 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP39Q53GS9 WASH6P-202ENST00000359512 1437 ntBASIC16.94■□□□□ 0.3
USP39Q53GS9 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP39Q53GS9 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP39Q53GS9 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP39Q53GS9 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.94■□□□□ 0.3
USP39Q53GS9 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP39Q53GS9 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP39Q53GS9 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.93■□□□□ 0.3
USP39Q53GS9 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
USP39Q53GS9 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.93■□□□□ 0.3
USP39Q53GS9 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
USP39Q53GS9 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
USP39Q53GS9 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 GK-202ENST00000378941 458 ntTSL 3 BASIC16.93■□□□□ 0.3
USP39Q53GS9 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.93■□□□□ 0.3
USP39Q53GS9 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.93■□□□□ 0.3
USP39Q53GS9 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.93■□□□□ 0.3
USP39Q53GS9 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.93■□□□□ 0.3
USP39Q53GS9 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.93■□□□□ 0.3
USP39Q53GS9 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
USP39Q53GS9 MIR6080-201ENST00000617359 66 ntBASIC16.93■□□□□ 0.3
USP39Q53GS9 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.93■□□□□ 0.3
USP39Q53GS9 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
USP39Q53GS9 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
USP39Q53GS9 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP39Q53GS9 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
USP39Q53GS9 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.93■□□□□ 0.3
USP39Q53GS9 AL353732.1-201ENST00000569618 1459 ntBASIC16.93■□□□□ 0.3
USP39Q53GS9 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP39Q53GS9 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
USP39Q53GS9 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP39Q53GS9 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
USP39Q53GS9 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USP39Q53GS9 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP39Q53GS9 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP39Q53GS9 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
USP39Q53GS9 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USP39Q53GS9 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
USP39Q53GS9 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.92■□□□□ 0.3
USP39Q53GS9 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP39Q53GS9 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.92■□□□□ 0.3
USP39Q53GS9 HCG4-201ENST00000418983 998 ntBASIC16.92■□□□□ 0.3
USP39Q53GS9 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.92■□□□□ 0.3
USP39Q53GS9 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
USP39Q53GS9 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USP39Q53GS9 AC027307.3-201ENST00000594262 1100 ntBASIC16.92■□□□□ 0.3
USP39Q53GS9 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USP39Q53GS9 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP39Q53GS9 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.92■□□□□ 0.3
USP39Q53GS9 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.92■□□□□ 0.3
USP39Q53GS9 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USP39Q53GS9 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
USP39Q53GS9 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP39Q53GS9 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
USP39Q53GS9 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP39Q53GS9 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
USP39Q53GS9 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.91■□□□□ 0.3
USP39Q53GS9 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.91■□□□□ 0.3
USP39Q53GS9 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
USP39Q53GS9 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms