Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 TMEM14DP-201ENST00000422205 345 ntBASIC16.43■□□□□ 0.22
CXCL12P48061 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC16.43■□□□□ 0.22
CXCL12P48061 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.43■□□□□ 0.22
CXCL12P48061 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC16.43■□□□□ 0.22
CXCL12P48061 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.43■□□□□ 0.22
CXCL12P48061 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.43■□□□□ 0.22
CXCL12P48061 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CXCL12P48061 AC119751.2-201ENST00000504529 210 ntBASIC16.43■□□□□ 0.22
CXCL12P48061 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CXCL12P48061 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC16.43■□□□□ 0.22
CXCL12P48061 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC16.43■□□□□ 0.22
CXCL12P48061 ORC6-206ENST00000568364 888 ntTSL 5 BASIC16.43■□□□□ 0.22
CXCL12P48061 MIR4525-201ENST00000580000 75 ntBASIC16.43■□□□□ 0.22
CXCL12P48061 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.43■□□□□ 0.22
CXCL12P48061 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.43■□□□□ 0.22
CXCL12P48061 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.43■□□□□ 0.22
CXCL12P48061 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CXCL12P48061 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.43■□□□□ 0.22
CXCL12P48061 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CXCL12P48061 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.43■□□□□ 0.22
CXCL12P48061 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CXCL12P48061 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC16.42■□□□□ 0.22
CXCL12P48061 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL12P48061 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL12P48061 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
CXCL12P48061 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL12P48061 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL12P48061 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL12P48061 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
CXCL12P48061 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL12P48061 FAM86MP-201ENST00000340703 885 ntBASIC16.42■□□□□ 0.22
CXCL12P48061 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CXCL12P48061 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.42■□□□□ 0.22
CXCL12P48061 AC098850.1-201ENST00000419919 790 ntBASIC16.42■□□□□ 0.22
CXCL12P48061 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.42■□□□□ 0.22
CXCL12P48061 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.42■□□□□ 0.22
CXCL12P48061 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL12P48061 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL12P48061 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.42■□□□□ 0.22
CXCL12P48061 PACS1-203ENST00000524815 628 ntTSL 4 BASIC16.42■□□□□ 0.22
CXCL12P48061 RRP7BP-205ENST00000566851 833 ntBASIC16.42■□□□□ 0.22
CXCL12P48061 TMEM261P1-201ENST00000604899 340 ntBASIC16.42■□□□□ 0.22
CXCL12P48061 WFDC1-204ENST00000613603 549 ntBASIC16.42■□□□□ 0.22
CXCL12P48061 AL033527.5-201ENST00000641382 801 ntBASIC16.42■□□□□ 0.22
CXCL12P48061 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL12P48061 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL12P48061 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.42■□□□□ 0.22
CXCL12P48061 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL12P48061 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
CXCL12P48061 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL12P48061 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC16.42■□□□□ 0.22
CXCL12P48061 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL12P48061 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL12P48061 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.42■□□□□ 0.22
CXCL12P48061 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CXCL12P48061 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CXCL12P48061 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CXCL12P48061 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC16.41■□□□□ 0.22
CXCL12P48061 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.41■□□□□ 0.22
CXCL12P48061 AL589987.1-201ENST00000453380 819 ntBASIC16.41■□□□□ 0.22
CXCL12P48061 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC16.41■□□□□ 0.22
CXCL12P48061 AC124947.2-201ENST00000547118 1133 ntBASIC16.41■□□□□ 0.22
CXCL12P48061 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
CXCL12P48061 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.41■□□□□ 0.22
CXCL12P48061 AC061975.2-201ENST00000581722 295 ntBASIC16.41■□□□□ 0.22
CXCL12P48061 AC015936.2-201ENST00000593177 259 ntBASIC16.41■□□□□ 0.22
CXCL12P48061 AC084346.2-201ENST00000607097 949 ntBASIC16.41■□□□□ 0.22
CXCL12P48061 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 PFAS-212ENST00000625942 396 ntTSL 5 BASIC16.41■□□□□ 0.22
CXCL12P48061 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.41■□□□□ 0.22
CXCL12P48061 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.41■□□□□ 0.22
CXCL12P48061 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 AL138688.1-201ENST00000624851 1594 ntBASIC16.41■□□□□ 0.22
CXCL12P48061 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC16.41■□□□□ 0.22
CXCL12P48061 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.41■□□□□ 0.22
CXCL12P48061 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.41■□□□□ 0.22
CXCL12P48061 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CXCL12P48061 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL12P48061 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CXCL12P48061 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CXCL12P48061 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.4■□□□□ 0.22
CXCL12P48061 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms