Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHRNA4P43681 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.81■□□□□ 0.28
CHRNA4P43681 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.81■□□□□ 0.28
CHRNA4P43681 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.81■□□□□ 0.28
CHRNA4P43681 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.81■□□□□ 0.28
CHRNA4P43681 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.81■□□□□ 0.28
CHRNA4P43681 AL031432.2-201ENST00000566714 459 ntBASIC16.81■□□□□ 0.28
CHRNA4P43681 AL928711.1-201ENST00000570165 459 ntBASIC16.81■□□□□ 0.28
CHRNA4P43681 U1.21-201ENST00000580816 167 ntBASIC16.81■□□□□ 0.28
CHRNA4P43681 AL513190.1-201ENST00000621254 727 ntBASIC16.81■□□□□ 0.28
CHRNA4P43681 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CHRNA4P43681 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHRNA4P43681 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHRNA4P43681 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.81■□□□□ 0.28
CHRNA4P43681 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHRNA4P43681 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.81■□□□□ 0.28
CHRNA4P43681 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHRNA4P43681 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHRNA4P43681 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHRNA4P43681 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.8■□□□□ 0.28
CHRNA4P43681 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CHRNA4P43681 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
CHRNA4P43681 AC018695.7-201ENST00000624587 2492 ntBASIC16.8■□□□□ 0.28
CHRNA4P43681 ME2P1-201ENST00000426028 1970 ntBASIC16.8■□□□□ 0.28
CHRNA4P43681 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
CHRNA4P43681 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
CHRNA4P43681 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.8■□□□□ 0.28
CHRNA4P43681 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CHRNA4P43681 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
CHRNA4P43681 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.8■□□□□ 0.28
CHRNA4P43681 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
CHRNA4P43681 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.8■□□□□ 0.28
CHRNA4P43681 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 MED15P5-201ENST00000423150 992 ntBASIC16.8■□□□□ 0.28
CHRNA4P43681 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.8■□□□□ 0.28
CHRNA4P43681 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
CHRNA4P43681 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.8■□□□□ 0.28
CHRNA4P43681 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 AC023141.13-201ENST00000604991 943 ntBASIC16.8■□□□□ 0.28
CHRNA4P43681 AL645728.2-201ENST00000641974 660 ntBASIC16.8■□□□□ 0.28
CHRNA4P43681 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.8■□□□□ 0.28
CHRNA4P43681 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHRNA4P43681 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA4P43681 GPAA1P2-202ENST00000606848 1787 ntBASIC16.79■□□□□ 0.28
CHRNA4P43681 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA4P43681 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CHRNA4P43681 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA4P43681 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA4P43681 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA4P43681 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA4P43681 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CHRNA4P43681 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA4P43681 AC092919.2-201ENST00000623631 1645 ntBASIC16.79■□□□□ 0.28
CHRNA4P43681 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CHRNA4P43681 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA4P43681 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA4P43681 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CHRNA4P43681 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA4P43681 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA4P43681 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.79■□□□□ 0.28
CHRNA4P43681 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.79■□□□□ 0.28
CHRNA4P43681 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA4P43681 AL022342.1-201ENST00000400363 863 ntBASIC16.79■□□□□ 0.28
CHRNA4P43681 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CHRNA4P43681 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CHRNA4P43681 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.79■□□□□ 0.28
CHRNA4P43681 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.79■□□□□ 0.28
CHRNA4P43681 KRT19P2-202ENST00000557173 1012 ntBASIC16.79■□□□□ 0.28
CHRNA4P43681 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
CHRNA4P43681 AL031055.1-201ENST00000606362 631 ntBASIC16.79■□□□□ 0.28
CHRNA4P43681 AC092865.6-201ENST00000642101 219 ntBASIC16.79■□□□□ 0.28
CHRNA4P43681 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
CHRNA4P43681 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA4P43681 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.79■□□□□ 0.28
CHRNA4P43681 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.79■□□□□ 0.28
CHRNA4P43681 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.79■□□□□ 0.28
CHRNA4P43681 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA4P43681 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA4P43681 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms