Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
HNF4AP41235 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HNF4AP41235 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
HNF4AP41235 AC104109.2-201ENST00000602919 1418 ntBASIC16.2■□□□□ 0.18
HNF4AP41235 UBALD1-205ENST00000590891 2641 ntBASIC16.2■□□□□ 0.18
HNF4AP41235 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HNF4AP41235 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.2■□□□□ 0.18
HNF4AP41235 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
HNF4AP41235 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.2■□□□□ 0.18
HNF4AP41235 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HNF4AP41235 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HNF4AP41235 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
HNF4AP41235 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.2■□□□□ 0.18
HNF4AP41235 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.2■□□□□ 0.18
HNF4AP41235 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.2■□□□□ 0.18
HNF4AP41235 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
HNF4AP41235 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.2■□□□□ 0.18
HNF4AP41235 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.2■□□□□ 0.18
HNF4AP41235 IGHV3-22-201ENST00000520721 359 ntBASIC16.2■□□□□ 0.18
HNF4AP41235 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.2■□□□□ 0.18
HNF4AP41235 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.2■□□□□ 0.18
HNF4AP41235 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.2■□□□□ 0.18
HNF4AP41235 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.2■□□□□ 0.18
HNF4AP41235 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.2■□□□□ 0.18
HNF4AP41235 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.2■□□□□ 0.18
HNF4AP41235 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.2■□□□□ 0.18
HNF4AP41235 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.2■□□□□ 0.18
HNF4AP41235 AP001350.2-201ENST00000625104 1094 ntBASIC16.2■□□□□ 0.18
HNF4AP41235 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HNF4AP41235 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HNF4AP41235 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.2■□□□□ 0.18
HNF4AP41235 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
HNF4AP41235 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HNF4AP41235 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HNF4AP41235 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
HNF4AP41235 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.2■□□□□ 0.18
HNF4AP41235 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
HNF4AP41235 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HNF4AP41235 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HNF4AP41235 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HNF4AP41235 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HNF4AP41235 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
HNF4AP41235 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HNF4AP41235 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.19■□□□□ 0.18
HNF4AP41235 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
HNF4AP41235 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
HNF4AP41235 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
HNF4AP41235 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
HNF4AP41235 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.19■□□□□ 0.18
HNF4AP41235 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
HNF4AP41235 MRPL20P1-201ENST00000400819 433 ntBASIC16.19■□□□□ 0.18
HNF4AP41235 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 AC009947.1-201ENST00000444350 727 ntBASIC16.19■□□□□ 0.18
HNF4AP41235 RPL13AP23-201ENST00000480739 586 ntBASIC16.19■□□□□ 0.18
HNF4AP41235 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.19■□□□□ 0.18
HNF4AP41235 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.19■□□□□ 0.18
HNF4AP41235 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
HNF4AP41235 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.19■□□□□ 0.18
HNF4AP41235 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
HNF4AP41235 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.19■□□□□ 0.18
HNF4AP41235 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
HNF4AP41235 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
HNF4AP41235 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.19■□□□□ 0.18
HNF4AP41235 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.19■□□□□ 0.18
HNF4AP41235 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 KRT8P39-201ENST00000396270 1433 ntBASIC16.19■□□□□ 0.18
HNF4AP41235 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HNF4AP41235 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.19■□□□□ 0.18
HNF4AP41235 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
HNF4AP41235 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.18■□□□□ 0.18
HNF4AP41235 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HNF4AP41235 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.18■□□□□ 0.18
HNF4AP41235 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.18■□□□□ 0.18
HNF4AP41235 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms