Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AP001350.2-201ENST00000625104 1094 ntBASIC16.35■□□□□ 0.21
SHMT2P34897 AC092865.6-201ENST00000642101 219 ntBASIC16.35■□□□□ 0.21
SHMT2P34897 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHMT2P34897 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
SHMT2P34897 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHMT2P34897 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.35■□□□□ 0.21
SHMT2P34897 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHMT2P34897 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHMT2P34897 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SHMT2P34897 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHMT2P34897 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SHMT2P34897 LINC00554-201ENST00000564841 3011 ntBASIC16.35■□□□□ 0.21
SHMT2P34897 AC092068.3-201ENST00000587894 2016 ntBASIC16.35■□□□□ 0.21
SHMT2P34897 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHMT2P34897 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.35■□□□□ 0.21
SHMT2P34897 AC012569.1-201ENST00000591191 1524 ntBASIC16.35■□□□□ 0.21
SHMT2P34897 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.34■□□□□ 0.21
SHMT2P34897 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
SHMT2P34897 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.34■□□□□ 0.21
SHMT2P34897 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.34■□□□□ 0.21
SHMT2P34897 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.34■□□□□ 0.21
SHMT2P34897 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.34■□□□□ 0.21
SHMT2P34897 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SHMT2P34897 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 MCCD1P2-201ENST00000423228 335 ntBASIC16.34■□□□□ 0.21
SHMT2P34897 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 AC074386.1-202ENST00000463561 864 ntBASIC16.34■□□□□ 0.21
SHMT2P34897 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.34■□□□□ 0.21
SHMT2P34897 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
SHMT2P34897 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.34■□□□□ 0.21
SHMT2P34897 AC087641.1-201ENST00000557561 1021 ntBASIC16.34■□□□□ 0.21
SHMT2P34897 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.34■□□□□ 0.21
SHMT2P34897 MTDHP5-201ENST00000598980 586 ntBASIC16.34■□□□□ 0.21
SHMT2P34897 AC023511.2-201ENST00000618803 211 ntBASIC16.34■□□□□ 0.21
SHMT2P34897 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
SHMT2P34897 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.34■□□□□ 0.21
SHMT2P34897 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.34■□□□□ 0.21
SHMT2P34897 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.34■□□□□ 0.21
SHMT2P34897 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SHMT2P34897 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.34■□□□□ 0.21
SHMT2P34897 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.34■□□□□ 0.21
SHMT2P34897 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.34■□□□□ 0.21
SHMT2P34897 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.34■□□□□ 0.21
SHMT2P34897 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHMT2P34897 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
SHMT2P34897 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
SHMT2P34897 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SHMT2P34897 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SHMT2P34897 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.33■□□□□ 0.21
SHMT2P34897 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SHMT2P34897 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SHMT2P34897 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.33■□□□□ 0.2
SHMT2P34897 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.33■□□□□ 0.2
SHMT2P34897 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SHMT2P34897 YBX2P1-201ENST00000394192 760 ntBASIC16.33■□□□□ 0.2
SHMT2P34897 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.33■□□□□ 0.2
SHMT2P34897 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SHMT2P34897 AC092865.5-201ENST00000545435 363 ntBASIC16.33■□□□□ 0.2
SHMT2P34897 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.33■□□□□ 0.2
SHMT2P34897 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.33■□□□□ 0.2
SHMT2P34897 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SHMT2P34897 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.33■□□□□ 0.2
SHMT2P34897 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SHMT2P34897 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.33■□□□□ 0.2
SHMT2P34897 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SHMT2P34897 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SHMT2P34897 AC131009.4-201ENST00000624048 1740 ntBASIC16.33■□□□□ 0.2
SHMT2P34897 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.33■□□□□ 0.2
SHMT2P34897 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SHMT2P34897 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SHMT2P34897 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SHMT2P34897 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.33■□□□□ 0.2
SHMT2P34897 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.32■□□□□ 0.2
SHMT2P34897 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.32■□□□□ 0.2
SHMT2P34897 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
SHMT2P34897 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHMT2P34897 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
SHMT2P34897 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SHMT2P34897 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHMT2P34897 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms