Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.53■□□□□ 0.4
BDNFP23560 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.53■□□□□ 0.4
BDNFP23560 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.53■□□□□ 0.4
BDNFP23560 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.53■□□□□ 0.4
BDNFP23560 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
BDNFP23560 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.53■□□□□ 0.4
BDNFP23560 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.53■□□□□ 0.4
BDNFP23560 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 AL645939.2-201ENST00000427340 991 ntBASIC17.53■□□□□ 0.4
BDNFP23560 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.53■□□□□ 0.4
BDNFP23560 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.53■□□□□ 0.4
BDNFP23560 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.53■□□□□ 0.4
BDNFP23560 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.53■□□□□ 0.4
BDNFP23560 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.53■□□□□ 0.4
BDNFP23560 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
BDNFP23560 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
BDNFP23560 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.53■□□□□ 0.4
BDNFP23560 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.53■□□□□ 0.4
BDNFP23560 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.53■□□□□ 0.4
BDNFP23560 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.53■□□□□ 0.4
BDNFP23560 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
BDNFP23560 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
BDNFP23560 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.53■□□□□ 0.4
BDNFP23560 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.53■□□□□ 0.4
BDNFP23560 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.53■□□□□ 0.4
BDNFP23560 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
BDNFP23560 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 OR6D1P-203ENST00000641209 4860 ntBASIC17.53■□□□□ 0.4
BDNFP23560 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
BDNFP23560 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.52■□□□□ 0.4
BDNFP23560 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
BDNFP23560 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
BDNFP23560 AC099398.1-201ENST00000567919 2776 ntBASIC17.52■□□□□ 0.4
BDNFP23560 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.52■□□□□ 0.4
BDNFP23560 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
BDNFP23560 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
BDNFP23560 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
BDNFP23560 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
BDNFP23560 AC078925.2-201ENST00000624013 1973 ntBASIC17.52■□□□□ 0.4
BDNFP23560 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.52■□□□□ 0.4
BDNFP23560 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
BDNFP23560 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
BDNFP23560 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
BDNFP23560 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.52■□□□□ 0.4
BDNFP23560 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.52■□□□□ 0.4
BDNFP23560 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.52■□□□□ 0.4
BDNFP23560 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
BDNFP23560 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
BDNFP23560 SLC25A39P2-201ENST00000537614 270 ntBASIC17.52■□□□□ 0.4
BDNFP23560 AP000842.3-202ENST00000569238 1080 ntBASIC17.52■□□□□ 0.4
BDNFP23560 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.52■□□□□ 0.4
BDNFP23560 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.52■□□□□ 0.4
BDNFP23560 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.52■□□□□ 0.4
BDNFP23560 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
BDNFP23560 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
BDNFP23560 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
BDNFP23560 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
BDNFP23560 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
BDNFP23560 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
BDNFP23560 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
BDNFP23560 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.52■□□□□ 0.39
BDNFP23560 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
BDNFP23560 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
BDNFP23560 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
BDNFP23560 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
BDNFP23560 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.52■□□□□ 0.39
BDNFP23560 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.51■□□□□ 0.39
BDNFP23560 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
BDNFP23560 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.51■□□□□ 0.39
BDNFP23560 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
BDNFP23560 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.51■□□□□ 0.39
BDNFP23560 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms