Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CYP2A7P1-201ENST00000595391 815 ntBASIC20.95■□□□□ 0.94
NPHP1O15259 AL138828.2-201ENST00000615812 383 ntBASIC20.95■□□□□ 0.94
NPHP1O15259 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC20.95■□□□□ 0.94
NPHP1O15259 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP1O15259 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC20.95■□□□□ 0.94
NPHP1O15259 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP1O15259 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP1O15259 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP1O15259 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
NPHP1O15259 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP1O15259 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP1O15259 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP1O15259 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP1O15259 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.94■□□□□ 0.94
NPHP1O15259 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
NPHP1O15259 AC142381.1-201ENST00000426099 345 ntBASIC20.94■□□□□ 0.94
NPHP1O15259 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC20.94■□□□□ 0.94
NPHP1O15259 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC20.94■□□□□ 0.94
NPHP1O15259 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC20.94■□□□□ 0.94
NPHP1O15259 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
NPHP1O15259 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC20.94■□□□□ 0.94
NPHP1O15259 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC20.94■□□□□ 0.94
NPHP1O15259 SPDYE22P-201ENST00000582158 798 ntBASIC20.94■□□□□ 0.94
NPHP1O15259 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC20.94■□□□□ 0.94
NPHP1O15259 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC20.94■□□□□ 0.94
NPHP1O15259 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP1O15259 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP1O15259 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP1O15259 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP1O15259 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP1O15259 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP1O15259 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC20.94■□□□□ 0.94
NPHP1O15259 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP1O15259 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC20.94■□□□□ 0.94
NPHP1O15259 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC20.94■□□□□ 0.94
NPHP1O15259 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC20.94■□□□□ 0.94
NPHP1O15259 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP1O15259 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
NPHP1O15259 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP1O15259 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP1O15259 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC20.93■□□□□ 0.94
NPHP1O15259 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
NPHP1O15259 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP1O15259 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP1O15259 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC20.93■□□□□ 0.94
NPHP1O15259 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP1O15259 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP1O15259 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP1O15259 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
NPHP1O15259 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
NPHP1O15259 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC20.93■□□□□ 0.94
NPHP1O15259 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP1O15259 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP1O15259 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
NPHP1O15259 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC20.93■□□□□ 0.94
NPHP1O15259 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC20.93■□□□□ 0.94
NPHP1O15259 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
NPHP1O15259 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC20.93■□□□□ 0.94
NPHP1O15259 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC20.93■□□□□ 0.94
NPHP1O15259 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP1O15259 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC20.93■□□□□ 0.94
NPHP1O15259 MTND6P24-201ENST00000440466 518 ntBASIC20.93■□□□□ 0.94
NPHP1O15259 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC20.93■□□□□ 0.94
NPHP1O15259 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC20.93■□□□□ 0.94
NPHP1O15259 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP1O15259 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC20.93■□□□□ 0.94
NPHP1O15259 AC007967.4-201ENST00000614700 386 ntBASIC20.93■□□□□ 0.94
NPHP1O15259 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP1O15259 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC20.93■□□□□ 0.94
NPHP1O15259 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP1O15259 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC20.93■□□□□ 0.94
NPHP1O15259 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP1O15259 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP1O15259 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP1O15259 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP1O15259 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP1O15259 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
NPHP1O15259 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
NPHP1O15259 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP1O15259 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP1O15259 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP1O15259 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP1O15259 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.92■□□□□ 0.94
NPHP1O15259 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP1O15259 LINC00896-202ENST00000609602 2128 ntBASIC20.92■□□□□ 0.94
NPHP1O15259 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP1O15259 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
NPHP1O15259 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC20.92■□□□□ 0.94
NPHP1O15259 NME2P1-201ENST00000426182 414 ntBASIC20.92■□□□□ 0.94
NPHP1O15259 AL353705.2-201ENST00000428243 662 ntBASIC20.92■□□□□ 0.94
NPHP1O15259 AC007274.1-201ENST00000439805 662 ntBASIC20.92■□□□□ 0.94
NPHP1O15259 LY6E-204ENST00000519546 971 ntTSL 2 BASIC20.92■□□□□ 0.94
NPHP1O15259 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC20.92■□□□□ 0.94
NPHP1O15259 STOM-203ENST00000538954 1257 ntTSL 5 BASIC20.92■□□□□ 0.94
NPHP1O15259 MPI-209ENST00000564003 1195 ntTSL 2 BASIC20.92■□□□□ 0.94
NPHP1O15259 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC20.92■□□□□ 0.94
NPHP1O15259 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
NPHP1O15259 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP1O15259 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
NPHP1O15259 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms