Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
AP4E1Q9UPM8 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
AP4E1Q9UPM8 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
AP4E1Q9UPM8 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
AP4E1Q9UPM8 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.31■□□□□ 0.36
AP4E1Q9UPM8 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
AP4E1Q9UPM8 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
AP4E1Q9UPM8 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
AP4E1Q9UPM8 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.31■□□□□ 0.36
AP4E1Q9UPM8 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
AP4E1Q9UPM8 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.31■□□□□ 0.36
AP4E1Q9UPM8 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
AP4E1Q9UPM8 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 AC005052.1-201ENST00000625181 2492 ntBASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 AL031055.1-201ENST00000606362 631 ntBASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 AL662844.4-201ENST00000606367 2838 ntBASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 GPAA1P2-202ENST00000606848 1787 ntBASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.3■□□□□ 0.36
AP4E1Q9UPM8 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 BCAR1-209ENST00000546196 1340 ntBASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 MED15P5-201ENST00000423150 992 ntBASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 AC140113.2-201ENST00000604370 208 ntBASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 AC004877.2-201ENST00000623941 599 ntBASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 ME2P1-201ENST00000426028 1970 ntBASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms