Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TM9SF3Q9HD45 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 SPDYE14P-201ENST00000442619 822 ntBASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 AC084121.4-201ENST00000641598 221 ntBASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 AF228730.8-201ENST00000642140 221 ntBASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TM9SF3Q9HD45 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 RNU1-129P-201ENST00000384064 167 ntBASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 U1.21-201ENST00000580816 167 ntBASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 AL031055.1-201ENST00000606362 631 ntBASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 AC008677.1-201ENST00000519230 1561 ntBASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 AC011270.2-201ENST00000624293 2550 ntBASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 AL118508.1-201ENST00000613502 2345 ntBASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TM9SF3Q9HD45 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 TOP3BP1-201ENST00000420768 1380 ntBASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 FO538757.1-201ENST00000623083 1397 ntBASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 SLC22A20-204ENST00000530038 1673 ntBASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms