Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 BX842568.4-201ENST00000421222 227 ntBASIC17.09■□□□□ 0.33
RTL3Q8N8U3 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 AC099522.2-201ENST00000607001 744 ntBASIC17.09■□□□□ 0.33
RTL3Q8N8U3 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTL3Q8N8U3 FER1L4-210ENST00000615531 5998 ntBASIC17.08■□□□□ 0.33
RTL3Q8N8U3 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RTL3Q8N8U3 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.08■□□□□ 0.33
RTL3Q8N8U3 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RTL3Q8N8U3 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RTL3Q8N8U3 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RTL3Q8N8U3 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RTL3Q8N8U3 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.08■□□□□ 0.33
RTL3Q8N8U3 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RTL3Q8N8U3 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RTL3Q8N8U3 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RTL3Q8N8U3 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RTL3Q8N8U3 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 AL078644.1-201ENST00000609881 752 ntBASIC17.08■□□□□ 0.32
RTL3Q8N8U3 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.08■□□□□ 0.32
RTL3Q8N8U3 AL161645.1-201ENST00000622716 1255 ntBASIC17.08■□□□□ 0.32
RTL3Q8N8U3 AC092902.6-201ENST00000641783 218 ntBASIC17.08■□□□□ 0.32
RTL3Q8N8U3 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 OR6D1P-203ENST00000641209 4860 ntBASIC17.08■□□□□ 0.32
RTL3Q8N8U3 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RTL3Q8N8U3 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 MKNK2P1-201ENST00000437526 628 ntBASIC17.07■□□□□ 0.32
RTL3Q8N8U3 ALG1L5P-201ENST00000482043 771 ntBASIC17.07■□□□□ 0.32
RTL3Q8N8U3 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
RTL3Q8N8U3 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms