Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 RHOQP3-201ENST00000437982 621 ntBASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 BX640515.1-201ENST00000617215 977 ntBASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC65Q8IXS2 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.52■□□□□ 0.55
CCDC65Q8IXS2 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.52■□□□□ 0.55
CCDC65Q8IXS2 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC18.52■□□□□ 0.55
CCDC65Q8IXS2 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC18.52■□□□□ 0.55
CCDC65Q8IXS2 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC65Q8IXS2 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.52■□□□□ 0.55
CCDC65Q8IXS2 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC18.52■□□□□ 0.55
CCDC65Q8IXS2 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC65Q8IXS2 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.55
CCDC65Q8IXS2 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC65Q8IXS2 PCDHB19P-201ENST00000570871 2371 ntBASIC18.52■□□□□ 0.55
CCDC65Q8IXS2 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC65Q8IXS2 GGT4P-201ENST00000623672 1708 ntBASIC18.52■□□□□ 0.55
CCDC65Q8IXS2 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC65Q8IXS2 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 HMGA1P7-201ENST00000406908 502 ntBASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 AC007064.4-201ENST00000637740 555 ntBASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 ZNF259P1-201ENST00000407656 1365 ntBASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC65Q8IXS2 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 AC064836.3-201ENST00000607928 673 ntBASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 AC120114.3-201ENST00000611923 658 ntBASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 AC079328.2-201ENST00000561241 3354 ntBASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms