Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SKA3Q8IX90 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC14.81□□□□□ -0.04
SKA3Q8IX90 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SKA3Q8IX90 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SKA3Q8IX90 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
SKA3Q8IX90 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
SKA3Q8IX90 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
SKA3Q8IX90 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
SKA3Q8IX90 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SKA3Q8IX90 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC14.81□□□□□ -0.04
SKA3Q8IX90 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC14.81□□□□□ -0.04
SKA3Q8IX90 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SKA3Q8IX90 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SKA3Q8IX90 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC14.81□□□□□ -0.04
SKA3Q8IX90 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SKA3Q8IX90 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SKA3Q8IX90 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
SKA3Q8IX90 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
SKA3Q8IX90 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC14.81□□□□□ -0.04
SKA3Q8IX90 AP002490.2-201ENST00000524791 560 ntBASIC14.81□□□□□ -0.04
SKA3Q8IX90 SLC25A1P1-201ENST00000528351 927 ntBASIC14.81□□□□□ -0.04
SKA3Q8IX90 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SKA3Q8IX90 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC14.81□□□□□ -0.04
SKA3Q8IX90 AC034105.1-201ENST00000563488 319 ntBASIC14.81□□□□□ -0.04
SKA3Q8IX90 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC14.81□□□□□ -0.04
SKA3Q8IX90 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC14.81□□□□□ -0.04
SKA3Q8IX90 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SKA3Q8IX90 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
SKA3Q8IX90 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SKA3Q8IX90 UBALD1-205ENST00000590891 2641 ntBASIC14.81□□□□□ -0.04
SKA3Q8IX90 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SKA3Q8IX90 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
SKA3Q8IX90 AC078925.2-201ENST00000624013 1973 ntBASIC14.81□□□□□ -0.04
SKA3Q8IX90 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC14.81□□□□□ -0.04
SKA3Q8IX90 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
SKA3Q8IX90 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SKA3Q8IX90 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
SKA3Q8IX90 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
SKA3Q8IX90 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
SKA3Q8IX90 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 AL391256.1-201ENST00000443260 1855 ntBASIC14.8□□□□□ -0.04
SKA3Q8IX90 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 AGGF1P2-201ENST00000426656 2106 ntBASIC14.8□□□□□ -0.04
SKA3Q8IX90 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC14.8□□□□□ -0.04
SKA3Q8IX90 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 NME4-212ENST00000621774 904 ntTSL 3 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 CYP51A1P2-201ENST00000419457 1499 ntBASIC14.8□□□□□ -0.04
SKA3Q8IX90 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.8□□□□□ -0.04
SKA3Q8IX90 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SKA3Q8IX90 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms