Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 CICP17-201ENST00000418553 2377 ntBASIC14□□□□□ -0.17
CCDC28AQ8IWP9 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 LY6E-205ENST00000519611 635 ntTSL 3 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 ADM-205ENST00000528544 586 ntTSL 2 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 RN7SL471P-201ENST00000580476 299 ntBASIC14□□□□□ -0.17
CCDC28AQ8IWP9 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 CABP2-204ENST00000636477 941 ntTSL 5 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 CICP23-201ENST00000605013 2741 ntBASIC14□□□□□ -0.17
CCDC28AQ8IWP9 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 BEND3P1-201ENST00000421591 1944 ntBASIC14□□□□□ -0.17
CCDC28AQ8IWP9 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 APP-205ENST00000358918 2366 ntTSL 5 BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 AC073648.6-201ENST00000641589 218 ntBASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC13.99□□□□□ -0.17
CCDC28AQ8IWP9 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 LINC00552-201ENST00000625151 2579 ntBASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28AQ8IWP9 PTPA-216ENST00000432651 857 ntTSL 2 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms