Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
ABCA4P78363 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
ABCA4P78363 AC008764.6-201ENST00000595909 2069 ntBASIC14.32□□□□□ -0.12
ABCA4P78363 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
ABCA4P78363 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
ABCA4P78363 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
ABCA4P78363 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
ABCA4P78363 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC14.32□□□□□ -0.12
ABCA4P78363 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC14.32□□□□□ -0.12
ABCA4P78363 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
ABCA4P78363 FAM220BP-201ENST00000377689 816 ntBASIC14.32□□□□□ -0.12
ABCA4P78363 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
ABCA4P78363 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
ABCA4P78363 SPTLC1P1-201ENST00000447199 261 ntBASIC14.32□□□□□ -0.12
ABCA4P78363 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC14.32□□□□□ -0.12
ABCA4P78363 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.32□□□□□ -0.12
ABCA4P78363 AL158211.3-201ENST00000607385 239 ntBASIC14.32□□□□□ -0.12
ABCA4P78363 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC14.32□□□□□ -0.12
ABCA4P78363 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
ABCA4P78363 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC14.32□□□□□ -0.12
ABCA4P78363 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
ABCA4P78363 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC14.32□□□□□ -0.12
ABCA4P78363 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
ABCA4P78363 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
ABCA4P78363 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
ABCA4P78363 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC14.32□□□□□ -0.12
ABCA4P78363 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC14.32□□□□□ -0.12
ABCA4P78363 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
ABCA4P78363 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
ABCA4P78363 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC14.31□□□□□ -0.12
ABCA4P78363 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC14.31□□□□□ -0.12
ABCA4P78363 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
ABCA4P78363 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC14.31□□□□□ -0.12
ABCA4P78363 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC14.31□□□□□ -0.12
ABCA4P78363 CDK2AP2P3-201ENST00000422476 372 ntBASIC14.31□□□□□ -0.12
ABCA4P78363 SLC25A6P5-201ENST00000435663 894 ntBASIC14.31□□□□□ -0.12
ABCA4P78363 U91328.1-201ENST00000437528 223 ntBASIC14.31□□□□□ -0.12
ABCA4P78363 RPS2P32-201ENST00000439199 892 ntBASIC14.31□□□□□ -0.12
ABCA4P78363 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC14.31□□□□□ -0.12
ABCA4P78363 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.31□□□□□ -0.12
ABCA4P78363 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.31□□□□□ -0.12
ABCA4P78363 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC14.31□□□□□ -0.12
ABCA4P78363 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.31□□□□□ -0.12
ABCA4P78363 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC14.31□□□□□ -0.12
ABCA4P78363 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.31□□□□□ -0.12
ABCA4P78363 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC14.31□□□□□ -0.12
ABCA4P78363 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14.31□□□□□ -0.12
ABCA4P78363 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC14.31□□□□□ -0.12
ABCA4P78363 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 AL606495.2-201ENST00000605867 535 ntBASIC14.31□□□□□ -0.12
ABCA4P78363 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA4P78363 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC14.3□□□□□ -0.12
ABCA4P78363 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms