Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VCPP55072 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
VCPP55072 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCPP55072 AC124947.2-201ENST00000547118 1133 ntBASIC17.89■□□□□ 0.45
VCPP55072 AL359881.2-201ENST00000602973 570 ntBASIC17.89■□□□□ 0.45
VCPP55072 AL353135.1-201ENST00000606729 504 ntBASIC17.89■□□□□ 0.45
VCPP55072 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.89■□□□□ 0.45
VCPP55072 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
VCPP55072 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCPP55072 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
VCPP55072 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
VCPP55072 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.89■□□□□ 0.45
VCPP55072 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.89■□□□□ 0.45
VCPP55072 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VCPP55072 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VCPP55072 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.89■□□□□ 0.45
VCPP55072 AL135999.2-201ENST00000622438 1686 ntBASIC17.89■□□□□ 0.45
VCPP55072 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
VCPP55072 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCPP55072 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VCPP55072 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
VCPP55072 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCPP55072 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VCPP55072 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCPP55072 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VCPP55072 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCPP55072 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.88■□□□□ 0.45
VCPP55072 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.88■□□□□ 0.45
VCPP55072 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCPP55072 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
VCPP55072 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCPP55072 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCPP55072 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC17.88■□□□□ 0.45
VCPP55072 EGFEM1P-202ENST00000431685 1563 ntBASIC17.88■□□□□ 0.45
VCPP55072 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCPP55072 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCPP55072 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
VCPP55072 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCPP55072 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
VCPP55072 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCPP55072 BASP1P1-201ENST00000430708 665 ntBASIC17.88■□□□□ 0.45
VCPP55072 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC17.88■□□□□ 0.45
VCPP55072 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.88■□□□□ 0.45
VCPP55072 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
VCPP55072 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.88■□□□□ 0.45
VCPP55072 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.88■□□□□ 0.45
VCPP55072 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.88■□□□□ 0.45
VCPP55072 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VCPP55072 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.88■□□□□ 0.45
VCPP55072 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VCPP55072 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VCPP55072 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VCPP55072 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
VCPP55072 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.88■□□□□ 0.45
VCPP55072 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VCPP55072 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCPP55072 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.88■□□□□ 0.45
VCPP55072 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCPP55072 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VCPP55072 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.88■□□□□ 0.45
VCPP55072 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCPP55072 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VCPP55072 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.88■□□□□ 0.45
VCPP55072 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
VCPP55072 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
VCPP55072 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.87■□□□□ 0.45
VCPP55072 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.87■□□□□ 0.45
VCPP55072 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.87■□□□□ 0.45
VCPP55072 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.87■□□□□ 0.45
VCPP55072 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 PTCHD3P3-201ENST00000403073 906 ntBASIC17.87■□□□□ 0.45
VCPP55072 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.87■□□□□ 0.45
VCPP55072 AC055876.3-201ENST00000431496 288 ntBASIC17.87■□□□□ 0.45
VCPP55072 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.87■□□□□ 0.45
VCPP55072 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.87■□□□□ 0.45
VCPP55072 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.87■□□□□ 0.45
VCPP55072 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.87■□□□□ 0.45
VCPP55072 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.87■□□□□ 0.45
VCPP55072 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.87■□□□□ 0.45
VCPP55072 AC138649.4-201ENST00000612222 287 ntBASIC17.87■□□□□ 0.45
VCPP55072 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
VCPP55072 REXO1L3P-201ENST00000622202 1288 ntBASIC17.87■□□□□ 0.45
VCPP55072 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.87■□□□□ 0.45
VCPP55072 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.87■□□□□ 0.45
VCPP55072 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms