Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.25■□□□□ 0.35
COPAP53621 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
COPAP53621 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPAP53621 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.25■□□□□ 0.35
COPAP53621 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.25■□□□□ 0.35
COPAP53621 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
COPAP53621 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPAP53621 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COPAP53621 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPAP53621 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
COPAP53621 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.25■□□□□ 0.35
COPAP53621 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COPAP53621 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.25■□□□□ 0.35
COPAP53621 AP000344.2-201ENST00000512987 629 ntBASIC17.25■□□□□ 0.35
COPAP53621 RFPL4AP1-201ENST00000530883 850 ntBASIC17.25■□□□□ 0.35
COPAP53621 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.25■□□□□ 0.35
COPAP53621 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COPAP53621 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPAP53621 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.25■□□□□ 0.35
COPAP53621 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPAP53621 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.25■□□□□ 0.35
COPAP53621 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
COPAP53621 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.25■□□□□ 0.35
COPAP53621 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.25■□□□□ 0.35
COPAP53621 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
COPAP53621 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.25■□□□□ 0.35
COPAP53621 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPAP53621 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPAP53621 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPAP53621 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
COPAP53621 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPAP53621 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COPAP53621 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COPAP53621 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.25■□□□□ 0.35
COPAP53621 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.25■□□□□ 0.35
COPAP53621 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
COPAP53621 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.24■□□□□ 0.35
COPAP53621 AC129492.6-201ENST00000611383 1305 ntBASIC17.24■□□□□ 0.35
COPAP53621 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COPAP53621 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COPAP53621 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.24■□□□□ 0.35
COPAP53621 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COPAP53621 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COPAP53621 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.24■□□□□ 0.35
COPAP53621 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.24■□□□□ 0.35
COPAP53621 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.24■□□□□ 0.35
COPAP53621 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COPAP53621 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.24■□□□□ 0.35
COPAP53621 AC107918.2-201ENST00000530817 355 ntBASIC17.24■□□□□ 0.35
COPAP53621 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COPAP53621 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.24■□□□□ 0.35
COPAP53621 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.24■□□□□ 0.35
COPAP53621 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.24■□□□□ 0.35
COPAP53621 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.24■□□□□ 0.35
COPAP53621 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.24■□□□□ 0.35
COPAP53621 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
COPAP53621 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COPAP53621 AL162727.3-201ENST00000635661 2787 ntBASIC17.24■□□□□ 0.35
COPAP53621 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COPAP53621 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
COPAP53621 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COPAP53621 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COPAP53621 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COPAP53621 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
COPAP53621 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COPAP53621 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
COPAP53621 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.23■□□□□ 0.35
COPAP53621 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COPAP53621 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
COPAP53621 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COPAP53621 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COPAP53621 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COPAP53621 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COPAP53621 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
COPAP53621 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
COPAP53621 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.23■□□□□ 0.35
COPAP53621 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COPAP53621 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.23■□□□□ 0.35
COPAP53621 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.23■□□□□ 0.35
COPAP53621 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
COPAP53621 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.23■□□□□ 0.35
COPAP53621 AL513210.1-201ENST00000629608 234 ntBASIC17.23■□□□□ 0.35
COPAP53621 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC17.23■□□□□ 0.35
COPAP53621 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
COPAP53621 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
COPAP53621 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
COPAP53621 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
COPAP53621 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
COPAP53621 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
COPAP53621 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
COPAP53621 AC060834.1-201ENST00000443027 2032 ntBASIC17.23■□□□□ 0.35
COPAP53621 FLJ38576-201ENST00000623820 2459 ntBASIC17.23■□□□□ 0.35
COPAP53621 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COPAP53621 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COPAP53621 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
COPAP53621 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.23■□□□□ 0.35
COPAP53621 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
COPAP53621 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
COPAP53621 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
COPAP53621 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 344.7 ms