Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NUP98P52948 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
NUP98P52948 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NUP98P52948 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NUP98P52948 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NUP98P52948 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC20.47■□□□□ 0.87
NUP98P52948 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
NUP98P52948 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NUP98P52948 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC20.46■□□□□ 0.87
NUP98P52948 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NUP98P52948 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NUP98P52948 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NUP98P52948 AZGP1P1-201ENST00000411909 902 ntBASIC20.46■□□□□ 0.87
NUP98P52948 SPDYE17-201ENST00000412399 783 ntBASIC20.46■□□□□ 0.87
NUP98P52948 TMEM14DP-201ENST00000422205 345 ntBASIC20.46■□□□□ 0.87
NUP98P52948 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC20.46■□□□□ 0.87
NUP98P52948 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC20.46■□□□□ 0.87
NUP98P52948 EEF1DP4-201ENST00000446006 880 ntBASIC20.46■□□□□ 0.87
NUP98P52948 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NUP98P52948 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC20.46■□□□□ 0.87
NUP98P52948 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NUP98P52948 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC20.46■□□□□ 0.87
NUP98P52948 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC20.46■□□□□ 0.87
NUP98P52948 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NUP98P52948 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC20.46■□□□□ 0.87
NUP98P52948 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
NUP98P52948 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC20.46■□□□□ 0.87
NUP98P52948 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NUP98P52948 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NUP98P52948 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC20.46■□□□□ 0.87
NUP98P52948 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NUP98P52948 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NUP98P52948 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NUP98P52948 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
NUP98P52948 OSM-203ENST00000403463 464 ntTSL 3 BASIC20.46■□□□□ 0.87
NUP98P52948 RAD18-204ENST00000418463 563 ntTSL 4 BASIC20.46■□□□□ 0.87
NUP98P52948 RAD18-205ENST00000421052 582 ntTSL 3 BASIC20.46■□□□□ 0.87
NUP98P52948 POLE2-203ENST00000553805 496 ntTSL 2 BASIC20.46■□□□□ 0.87
NUP98P52948 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NUP98P52948 AC026979.3-201ENST00000607315 403 ntBASIC20.46■□□□□ 0.87
NUP98P52948 AL391069.4-201ENST00000609583 481 ntBASIC20.46■□□□□ 0.87
NUP98P52948 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC20.46■□□□□ 0.87
NUP98P52948 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC20.46■□□□□ 0.87
NUP98P52948 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
NUP98P52948 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NUP98P52948 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC20.45■□□□□ 0.86
NUP98P52948 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC20.45■□□□□ 0.86
NUP98P52948 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
NUP98P52948 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NUP98P52948 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NUP98P52948 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC20.45■□□□□ 0.86
NUP98P52948 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC20.45■□□□□ 0.86
NUP98P52948 KRT17P7-201ENST00000451704 1104 ntBASIC20.45■□□□□ 0.86
NUP98P52948 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
NUP98P52948 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NUP98P52948 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC20.45■□□□□ 0.86
NUP98P52948 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
NUP98P52948 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC20.45■□□□□ 0.86
NUP98P52948 AC099568.2-201ENST00000609194 695 ntBASIC20.45■□□□□ 0.86
NUP98P52948 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC20.45■□□□□ 0.86
NUP98P52948 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC20.45■□□□□ 0.86
NUP98P52948 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NUP98P52948 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC20.45■□□□□ 0.86
NUP98P52948 AC006538.1-201ENST00000567905 1585 ntBASIC20.44■□□□□ 0.86
NUP98P52948 CYP4F24P-201ENST00000586049 1580 ntBASIC20.44■□□□□ 0.86
NUP98P52948 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NUP98P52948 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NUP98P52948 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.44■□□□□ 0.86
NUP98P52948 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC20.44■□□□□ 0.86
NUP98P52948 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC20.44■□□□□ 0.86
NUP98P52948 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NUP98P52948 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
NUP98P52948 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC20.44■□□□□ 0.86
NUP98P52948 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC20.44■□□□□ 0.86
NUP98P52948 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
NUP98P52948 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC20.44■□□□□ 0.86
NUP98P52948 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC20.44■□□□□ 0.86
NUP98P52948 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC20.44■□□□□ 0.86
NUP98P52948 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC20.44■□□□□ 0.86
NUP98P52948 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NUP98P52948 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC20.44■□□□□ 0.86
NUP98P52948 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NUP98P52948 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC20.44■□□□□ 0.86
NUP98P52948 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NUP98P52948 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
NUP98P52948 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
NUP98P52948 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NUP98P52948 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC20.44■□□□□ 0.86
NUP98P52948 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
NUP98P52948 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NUP98P52948 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
NUP98P52948 ATP5G2P4-201ENST00000442175 420 ntBASIC20.43■□□□□ 0.86
NUP98P52948 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC20.43■□□□□ 0.86
NUP98P52948 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
NUP98P52948 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
NUP98P52948 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
NUP98P52948 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NUP98P52948 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
NUP98P52948 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC20.43■□□□□ 0.86
NUP98P52948 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms