Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 LGALS8-AS1-201ENST00000487567 1457 ntBASIC13.93□□□□□ -0.18
HOXA1P49639 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 CR383656.2-201ENST00000548656 2254 ntBASIC13.93□□□□□ -0.18
HOXA1P49639 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
HOXA1P49639 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
HOXA1P49639 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC13.93□□□□□ -0.18
HOXA1P49639 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
HOXA1P49639 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 COX5BP2-201ENST00000392354 334 ntBASIC13.93□□□□□ -0.18
HOXA1P49639 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
HOXA1P49639 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC13.93□□□□□ -0.18
HOXA1P49639 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC13.93□□□□□ -0.18
HOXA1P49639 AC109462.3-201ENST00000573934 613 ntBASIC13.93□□□□□ -0.18
HOXA1P49639 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC13.93□□□□□ -0.18
HOXA1P49639 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC13.93□□□□□ -0.18
HOXA1P49639 AC005332.3-201ENST00000589904 676 ntBASIC13.93□□□□□ -0.18
HOXA1P49639 AC139887.4-201ENST00000607877 719 ntBASIC13.93□□□□□ -0.18
HOXA1P49639 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 AC011558.1-201ENST00000623459 338 ntBASIC13.93□□□□□ -0.18
HOXA1P49639 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC13.93□□□□□ -0.18
HOXA1P49639 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
HOXA1P49639 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
HOXA1P49639 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
HOXA1P49639 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
HOXA1P49639 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
HOXA1P49639 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
HOXA1P49639 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC13.93□□□□□ -0.18
HOXA1P49639 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC13.93□□□□□ -0.18
HOXA1P49639 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.93□□□□□ -0.18
HOXA1P49639 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC13.92□□□□□ -0.18
HOXA1P49639 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC13.92□□□□□ -0.18
HOXA1P49639 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXA1P49639 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC13.92□□□□□ -0.18
HOXA1P49639 AC010460.3-201ENST00000511359 1579 ntBASIC13.92□□□□□ -0.18
HOXA1P49639 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC13.92□□□□□ -0.18
HOXA1P49639 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
HOXA1P49639 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.92□□□□□ -0.18
HOXA1P49639 AC092053.1-201ENST00000605787 1936 ntBASIC13.92□□□□□ -0.18
HOXA1P49639 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXA1P49639 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
HOXA1P49639 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXA1P49639 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC13.92□□□□□ -0.18
HOXA1P49639 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 MIR662-201ENST00000384847 95 ntBASIC13.92□□□□□ -0.18
HOXA1P49639 AL137013.1-201ENST00000432946 1228 ntBASIC13.92□□□□□ -0.18
HOXA1P49639 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC13.92□□□□□ -0.18
HOXA1P49639 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXA1P49639 BX664615.1-201ENST00000443558 458 ntBASIC13.92□□□□□ -0.18
HOXA1P49639 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC13.92□□□□□ -0.18
HOXA1P49639 SNX5-210ENST00000481323 562 ntTSL 3 BASIC13.92□□□□□ -0.18
HOXA1P49639 YBX1P2-201ENST00000489612 999 ntBASIC13.92□□□□□ -0.18
HOXA1P49639 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC13.92□□□□□ -0.18
HOXA1P49639 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXA1P49639 NAA38-203ENST00000575071 553 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXA1P49639 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC13.92□□□□□ -0.18
HOXA1P49639 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC13.92□□□□□ -0.18
HOXA1P49639 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
HOXA1P49639 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXA1P49639 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXA1P49639 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXA1P49639 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
HOXA1P49639 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms