Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
PTPN9P43378 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PTPN9P43378 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.32■□□□□ 0.36
PTPN9P43378 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PTPN9P43378 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.32■□□□□ 0.36
PTPN9P43378 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.32■□□□□ 0.36
PTPN9P43378 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN9P43378 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN9P43378 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.32■□□□□ 0.36
PTPN9P43378 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.32■□□□□ 0.36
PTPN9P43378 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN9P43378 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN9P43378 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN9P43378 AC092919.2-201ENST00000623631 1645 ntBASIC17.32■□□□□ 0.36
PTPN9P43378 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.32■□□□□ 0.36
PTPN9P43378 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.31■□□□□ 0.36
PTPN9P43378 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN9P43378 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN9P43378 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.31■□□□□ 0.36
PTPN9P43378 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PTPN9P43378 PCDHB19P-201ENST00000570871 2371 ntBASIC17.31■□□□□ 0.36
PTPN9P43378 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN9P43378 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN9P43378 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.31■□□□□ 0.36
PTPN9P43378 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN9P43378 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN9P43378 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.31■□□□□ 0.36
PTPN9P43378 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
PTPN9P43378 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.31■□□□□ 0.36
PTPN9P43378 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.31■□□□□ 0.36
PTPN9P43378 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN9P43378 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN9P43378 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN9P43378 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.31■□□□□ 0.36
PTPN9P43378 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN9P43378 PGAM5P1-201ENST00000518923 814 ntBASIC17.31■□□□□ 0.36
PTPN9P43378 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.31■□□□□ 0.36
PTPN9P43378 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN9P43378 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
PTPN9P43378 AC040169.1-201ENST00000565382 521 ntBASIC17.31■□□□□ 0.36
PTPN9P43378 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.31■□□□□ 0.36
PTPN9P43378 AP002472.1-201ENST00000577490 586 ntBASIC17.31■□□□□ 0.36
PTPN9P43378 AL671883.3-201ENST00000603274 991 ntBASIC17.31■□□□□ 0.36
PTPN9P43378 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.31■□□□□ 0.36
PTPN9P43378 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.31■□□□□ 0.36
PTPN9P43378 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN9P43378 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN9P43378 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN9P43378 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PTPN9P43378 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.31■□□□□ 0.36
PTPN9P43378 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
PTPN9P43378 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN9P43378 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTPN9P43378 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.3■□□□□ 0.36
PTPN9P43378 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN9P43378 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
PTPN9P43378 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
PTPN9P43378 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN9P43378 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.3■□□□□ 0.36
PTPN9P43378 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN9P43378 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN9P43378 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.3■□□□□ 0.36
PTPN9P43378 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN9P43378 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN9P43378 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN9P43378 POU5F1P6-201ENST00000466990 990 ntBASIC17.3■□□□□ 0.36
PTPN9P43378 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.3■□□□□ 0.36
PTPN9P43378 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.3■□□□□ 0.36
PTPN9P43378 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN9P43378 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN9P43378 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.3■□□□□ 0.36
PTPN9P43378 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
PTPN9P43378 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
PTPN9P43378 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.3■□□□□ 0.36
PTPN9P43378 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN9P43378 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.3■□□□□ 0.36
PTPN9P43378 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
PTPN9P43378 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN9P43378 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN9P43378 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN9P43378 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN9P43378 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
PTPN9P43378 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
PTPN9P43378 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTPN9P43378 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
PTPN9P43378 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.3■□□□□ 0.36
PTPN9P43378 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
PTPN9P43378 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.29■□□□□ 0.36
PTPN9P43378 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN9P43378 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN9P43378 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.29■□□□□ 0.36
PTPN9P43378 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN9P43378 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN9P43378 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN9P43378 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.29■□□□□ 0.36
PTPN9P43378 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN9P43378 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN9P43378 AC006449.5-201ENST00000610658 2098 ntBASIC17.29■□□□□ 0.36
PTPN9P43378 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN9P43378 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms