Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
SHMT2P34897 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHMT2P34897 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.37■□□□□ 0.21
SHMT2P34897 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.37■□□□□ 0.21
SHMT2P34897 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHMT2P34897 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHMT2P34897 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHMT2P34897 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHMT2P34897 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
SHMT2P34897 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHMT2P34897 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHMT2P34897 AC023274.1-201ENST00000418278 595 ntBASIC16.37■□□□□ 0.21
SHMT2P34897 HCG4-201ENST00000418983 998 ntBASIC16.37■□□□□ 0.21
SHMT2P34897 BX842568.4-201ENST00000421222 227 ntBASIC16.37■□□□□ 0.21
SHMT2P34897 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.37■□□□□ 0.21
SHMT2P34897 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.37■□□□□ 0.21
SHMT2P34897 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
SHMT2P34897 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.37■□□□□ 0.21
SHMT2P34897 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHMT2P34897 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.37■□□□□ 0.21
SHMT2P34897 PDPK2P-202ENST00000562415 1191 ntBASIC16.37■□□□□ 0.21
SHMT2P34897 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHMT2P34897 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHMT2P34897 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.37■□□□□ 0.21
SHMT2P34897 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHMT2P34897 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHMT2P34897 PCDHB17P-201ENST00000539533 2393 ntBASIC16.37■□□□□ 0.21
SHMT2P34897 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHMT2P34897 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHMT2P34897 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.37■□□□□ 0.21
SHMT2P34897 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.37■□□□□ 0.21
SHMT2P34897 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHMT2P34897 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHMT2P34897 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHMT2P34897 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
SHMT2P34897 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHMT2P34897 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHMT2P34897 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.36■□□□□ 0.21
SHMT2P34897 AC025580.3-201ENST00000617932 1424 ntBASIC16.36■□□□□ 0.21
SHMT2P34897 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SHMT2P34897 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHMT2P34897 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.36■□□□□ 0.21
SHMT2P34897 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SHMT2P34897 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHMT2P34897 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
SHMT2P34897 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.36■□□□□ 0.21
SHMT2P34897 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.36■□□□□ 0.21
SHMT2P34897 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHMT2P34897 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHMT2P34897 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHMT2P34897 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHMT2P34897 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHMT2P34897 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.36■□□□□ 0.21
SHMT2P34897 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.36■□□□□ 0.21
SHMT2P34897 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
SHMT2P34897 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.36■□□□□ 0.21
SHMT2P34897 DNAJB3-201ENST00000446806 729 ntBASIC16.36■□□□□ 0.21
SHMT2P34897 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
SHMT2P34897 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.36■□□□□ 0.21
SHMT2P34897 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.36■□□□□ 0.21
SHMT2P34897 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.36■□□□□ 0.21
SHMT2P34897 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.36■□□□□ 0.21
SHMT2P34897 MIR4515-201ENST00000584082 81 ntBASIC16.36■□□□□ 0.21
SHMT2P34897 AL513190.1-201ENST00000621254 727 ntBASIC16.36■□□□□ 0.21
SHMT2P34897 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SHMT2P34897 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
SHMT2P34897 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
SHMT2P34897 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
SHMT2P34897 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHMT2P34897 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHMT2P34897 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHMT2P34897 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SHMT2P34897 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHMT2P34897 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SHMT2P34897 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.35■□□□□ 0.21
SHMT2P34897 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SHMT2P34897 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SHMT2P34897 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SHMT2P34897 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
SHMT2P34897 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.35■□□□□ 0.21
SHMT2P34897 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
SHMT2P34897 AC026691.1-201ENST00000602502 2017 ntBASIC16.35■□□□□ 0.21
SHMT2P34897 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SHMT2P34897 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHMT2P34897 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHMT2P34897 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHMT2P34897 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.35■□□□□ 0.21
SHMT2P34897 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.35■□□□□ 0.21
SHMT2P34897 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHMT2P34897 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHMT2P34897 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.35■□□□□ 0.21
SHMT2P34897 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.35■□□□□ 0.21
SHMT2P34897 AP002490.2-201ENST00000524791 560 ntBASIC16.35■□□□□ 0.21
SHMT2P34897 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.35■□□□□ 0.21
SHMT2P34897 AL031432.2-201ENST00000566714 459 ntBASIC16.35■□□□□ 0.21
SHMT2P34897 AL928711.1-201ENST00000570165 459 ntBASIC16.35■□□□□ 0.21
SHMT2P34897 MPDU1-223ENST00000582151 728 ntBASIC16.35■□□□□ 0.21
SHMT2P34897 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.35■□□□□ 0.21
SHMT2P34897 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.35■□□□□ 0.21
SHMT2P34897 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms