Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC20.64■□□□□ 0.89
COL5A3P25940 AC060834.1-201ENST00000443027 2032 ntBASIC20.64■□□□□ 0.89
COL5A3P25940 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL5A3P25940 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC20.64■□□□□ 0.89
COL5A3P25940 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
COL5A3P25940 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL5A3P25940 AL355994.2-201ENST00000447882 704 ntBASIC20.64■□□□□ 0.89
COL5A3P25940 AC245100.5-201ENST00000452108 331 ntBASIC20.64■□□□□ 0.89
COL5A3P25940 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC20.64■□□□□ 0.89
COL5A3P25940 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
COL5A3P25940 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL5A3P25940 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
COL5A3P25940 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.64■□□□□ 0.89
COL5A3P25940 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL5A3P25940 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
COL5A3P25940 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL5A3P25940 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL5A3P25940 AMT-232ENST00000636199 1546 ntTSL 5 BASIC20.63■□□□□ 0.89
COL5A3P25940 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC20.63■□□□□ 0.89
COL5A3P25940 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC20.63■□□□□ 0.89
COL5A3P25940 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC20.63■□□□□ 0.89
COL5A3P25940 NOC2LP2-201ENST00000407594 1944 ntBASIC20.63■□□□□ 0.89
COL5A3P25940 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
COL5A3P25940 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL5A3P25940 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
COL5A3P25940 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
COL5A3P25940 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC20.63■□□□□ 0.89
COL5A3P25940 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC20.63■□□□□ 0.89
COL5A3P25940 SUOX-214ENST00000551841 906 ntTSL 3 BASIC20.63■□□□□ 0.89
COL5A3P25940 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC20.63■□□□□ 0.89
COL5A3P25940 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC20.63■□□□□ 0.89
COL5A3P25940 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC20.63■□□□□ 0.89
COL5A3P25940 RPS24-214ENST00000613865 538 ntTSL 5 BASIC20.63■□□□□ 0.89
COL5A3P25940 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL5A3P25940 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL5A3P25940 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
COL5A3P25940 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
COL5A3P25940 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL5A3P25940 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.62■□□□□ 0.89
COL5A3P25940 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC20.62■□□□□ 0.89
COL5A3P25940 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A3P25940 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
COL5A3P25940 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A3P25940 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC20.62■□□□□ 0.89
COL5A3P25940 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A3P25940 AL442647.2-201ENST00000429864 857 ntBASIC20.62■□□□□ 0.89
COL5A3P25940 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC20.62■□□□□ 0.89
COL5A3P25940 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC20.62■□□□□ 0.89
COL5A3P25940 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A3P25940 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC20.62■□□□□ 0.89
COL5A3P25940 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
COL5A3P25940 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.62■□□□□ 0.89
COL5A3P25940 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
COL5A3P25940 CD276-203ENST00000537340 2439 ntTSL 2 BASIC20.62■□□□□ 0.89
COL5A3P25940 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.62■□□□□ 0.89
COL5A3P25940 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A3P25940 AL391256.1-201ENST00000443260 1855 ntBASIC20.62■□□□□ 0.89
COL5A3P25940 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A3P25940 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A3P25940 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A3P25940 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
COL5A3P25940 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
COL5A3P25940 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
COL5A3P25940 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC20.61■□□□□ 0.89
COL5A3P25940 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A3P25940 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC20.61■□□□□ 0.89
COL5A3P25940 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A3P25940 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC20.61■□□□□ 0.89
COL5A3P25940 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC20.61■□□□□ 0.89
COL5A3P25940 AC124283.3-201ENST00000570869 594 ntBASIC20.61■□□□□ 0.89
COL5A3P25940 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A3P25940 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC20.61■□□□□ 0.89
COL5A3P25940 SPIB-207ENST00000597855 564 ntTSL 4 BASIC20.61■□□□□ 0.89
COL5A3P25940 TECR-220ENST00000600083 1204 ntTSL 2 BASIC20.61■□□□□ 0.89
COL5A3P25940 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
COL5A3P25940 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A3P25940 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC20.61■□□□□ 0.89
COL5A3P25940 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A3P25940 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
COL5A3P25940 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A3P25940 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A3P25940 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A3P25940 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC20.61■□□□□ 0.89
COL5A3P25940 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC20.61■□□□□ 0.89
COL5A3P25940 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
COL5A3P25940 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.61■□□□□ 0.89
COL5A3P25940 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A3P25940 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
COL5A3P25940 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A3P25940 BOLA2P3-201ENST00000404566 256 ntBASIC20.61■□□□□ 0.89
COL5A3P25940 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A3P25940 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC20.61■□□□□ 0.89
COL5A3P25940 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC20.61■□□□□ 0.89
COL5A3P25940 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC20.61■□□□□ 0.89
COL5A3P25940 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC20.61■□□□□ 0.89
COL5A3P25940 AC233724.13-201ENST00000598383 410 ntBASIC20.61■□□□□ 0.89
COL5A3P25940 AL603756.1-201ENST00000606511 2163 ntBASIC20.61■□□□□ 0.89
COL5A3P25940 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
COL5A3P25940 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A3P25940 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms