Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL9A1P20849 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL9A1P20849 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL9A1P20849 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.02■□□□□ 0.32
COL9A1P20849 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL9A1P20849 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL9A1P20849 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL9A1P20849 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL9A1P20849 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.02■□□□□ 0.32
COL9A1P20849 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL9A1P20849 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL9A1P20849 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL9A1P20849 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL9A1P20849 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL9A1P20849 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.02■□□□□ 0.32
COL9A1P20849 MIR33B-201ENST00000385104 96 ntBASIC17.02■□□□□ 0.32
COL9A1P20849 AL662890.1-201ENST00000396818 632 ntBASIC17.02■□□□□ 0.32
COL9A1P20849 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL9A1P20849 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC17.02■□□□□ 0.32
COL9A1P20849 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL9A1P20849 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC17.02■□□□□ 0.32
COL9A1P20849 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL9A1P20849 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC17.02■□□□□ 0.32
COL9A1P20849 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC17.02■□□□□ 0.32
COL9A1P20849 AP001258.2-201ENST00000529891 490 ntBASIC17.02■□□□□ 0.32
COL9A1P20849 AC109635.5-201ENST00000533593 962 ntBASIC17.02■□□□□ 0.32
COL9A1P20849 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC17.02■□□□□ 0.32
COL9A1P20849 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.02■□□□□ 0.32
COL9A1P20849 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
COL9A1P20849 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC17.02■□□□□ 0.32
COL9A1P20849 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.02■□□□□ 0.31
COL9A1P20849 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.02■□□□□ 0.31
COL9A1P20849 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
COL9A1P20849 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
COL9A1P20849 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.02■□□□□ 0.31
COL9A1P20849 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
COL9A1P20849 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.02■□□□□ 0.31
COL9A1P20849 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.31
COL9A1P20849 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL9A1P20849 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL9A1P20849 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL9A1P20849 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL9A1P20849 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL9A1P20849 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC17.01■□□□□ 0.31
COL9A1P20849 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL9A1P20849 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL9A1P20849 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL9A1P20849 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL9A1P20849 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC17.01■□□□□ 0.31
COL9A1P20849 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL9A1P20849 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL9A1P20849 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC17.01■□□□□ 0.31
COL9A1P20849 RASL12-203ENST00000434605 982 ntTSL 2 BASIC17.01■□□□□ 0.31
COL9A1P20849 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC17.01■□□□□ 0.31
COL9A1P20849 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC17.01■□□□□ 0.31
COL9A1P20849 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
COL9A1P20849 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.01■□□□□ 0.31
COL9A1P20849 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC17.01■□□□□ 0.31
COL9A1P20849 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC17.01■□□□□ 0.31
COL9A1P20849 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC17.01■□□□□ 0.31
COL9A1P20849 AC091271.1-201ENST00000611877 1162 ntBASIC17.01■□□□□ 0.31
COL9A1P20849 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC17.01■□□□□ 0.31
COL9A1P20849 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL9A1P20849 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
COL9A1P20849 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL9A1P20849 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL9A1P20849 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC17.01■□□□□ 0.31
COL9A1P20849 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC17.01■□□□□ 0.31
COL9A1P20849 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.01■□□□□ 0.31
COL9A1P20849 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.01■□□□□ 0.31
COL9A1P20849 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
COL9A1P20849 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
COL9A1P20849 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
COL9A1P20849 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
COL9A1P20849 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
COL9A1P20849 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL9A1P20849 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17■□□□□ 0.31
COL9A1P20849 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL9A1P20849 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL9A1P20849 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17■□□□□ 0.31
COL9A1P20849 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17■□□□□ 0.31
COL9A1P20849 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL9A1P20849 AC008764.6-201ENST00000595909 2069 ntBASIC17■□□□□ 0.31
COL9A1P20849 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL9A1P20849 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
COL9A1P20849 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL9A1P20849 RNU1-129P-201ENST00000384064 167 ntBASIC17■□□□□ 0.31
COL9A1P20849 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
COL9A1P20849 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC17■□□□□ 0.31
COL9A1P20849 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
COL9A1P20849 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
COL9A1P20849 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL9A1P20849 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC17■□□□□ 0.31
COL9A1P20849 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC17■□□□□ 0.31
COL9A1P20849 AC123567.1-201ENST00000548294 1261 ntBASIC17■□□□□ 0.31
COL9A1P20849 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC17■□□□□ 0.31
COL9A1P20849 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL9A1P20849 ACTG1P17-201ENST00000558391 1119 ntBASIC17■□□□□ 0.31
COL9A1P20849 RARRES2P9-201ENST00000565168 469 ntBASIC17■□□□□ 0.31
COL9A1P20849 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms