Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.32■□□□□ 0.84
CHMP1AQ9HD42 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.32■□□□□ 0.84
CHMP1AQ9HD42 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP1AQ9HD42 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.32■□□□□ 0.84
CHMP1AQ9HD42 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP1AQ9HD42 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP1AQ9HD42 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP1AQ9HD42 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP1AQ9HD42 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP1AQ9HD42 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP1AQ9HD42 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CHMP1AQ9HD42 HLA-V-202ENST00000446817 847 ntBASIC20.31■□□□□ 0.84
CHMP1AQ9HD42 ZNRF2P2-203ENST00000454624 420 ntBASIC20.31■□□□□ 0.84
CHMP1AQ9HD42 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP1AQ9HD42 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP1AQ9HD42 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
CHMP1AQ9HD42 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.3■□□□□ 0.84
CHMP1AQ9HD42 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP1AQ9HD42 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP1AQ9HD42 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.3■□□□□ 0.84
CHMP1AQ9HD42 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC20.3■□□□□ 0.84
CHMP1AQ9HD42 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
CHMP1AQ9HD42 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP1AQ9HD42 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CHMP1AQ9HD42 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.3■□□□□ 0.84
CHMP1AQ9HD42 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP1AQ9HD42 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.29■□□□□ 0.84
CHMP1AQ9HD42 AC142381.3-201ENST00000568208 1670 ntBASIC20.29■□□□□ 0.84
CHMP1AQ9HD42 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP1AQ9HD42 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP1AQ9HD42 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.29■□□□□ 0.84
CHMP1AQ9HD42 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP1AQ9HD42 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP1AQ9HD42 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.29■□□□□ 0.84
CHMP1AQ9HD42 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP1AQ9HD42 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CHMP1AQ9HD42 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP1AQ9HD42 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP1AQ9HD42 AL359504.2-201ENST00000605506 1601 ntBASIC20.28■□□□□ 0.84
CHMP1AQ9HD42 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.28■□□□□ 0.84
CHMP1AQ9HD42 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP1AQ9HD42 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
CHMP1AQ9HD42 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CHMP1AQ9HD42 AC133561.1-201ENST00000568600 2415 ntBASIC20.27■□□□□ 0.84
CHMP1AQ9HD42 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP1AQ9HD42 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP1AQ9HD42 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP1AQ9HD42 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP1AQ9HD42 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CHMP1AQ9HD42 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.27■□□□□ 0.84
CHMP1AQ9HD42 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC20.27■□□□□ 0.84
CHMP1AQ9HD42 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP1AQ9HD42 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP1AQ9HD42 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.83
CHMP1AQ9HD42 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CHMP1AQ9HD42 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CHMP1AQ9HD42 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CHMP1AQ9HD42 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP1AQ9HD42 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP1AQ9HD42 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP1AQ9HD42 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CHMP1AQ9HD42 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP1AQ9HD42 AC126177.7-201ENST00000547904 679 ntBASIC20.26■□□□□ 0.83
CHMP1AQ9HD42 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP1AQ9HD42 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP1AQ9HD42 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CHMP1AQ9HD42 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.26■□□□□ 0.83
CHMP1AQ9HD42 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CHMP1AQ9HD42 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.26■□□□□ 0.83
CHMP1AQ9HD42 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.25■□□□□ 0.83
CHMP1AQ9HD42 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.25■□□□□ 0.83
CHMP1AQ9HD42 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP1AQ9HD42 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
CHMP1AQ9HD42 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.25■□□□□ 0.83
CHMP1AQ9HD42 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CHMP1AQ9HD42 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.25■□□□□ 0.83
CHMP1AQ9HD42 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
CHMP1AQ9HD42 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP1AQ9HD42 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.25■□□□□ 0.83
CHMP1AQ9HD42 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CHMP1AQ9HD42 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP1AQ9HD42 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP1AQ9HD42 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP1AQ9HD42 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.24■□□□□ 0.83
CHMP1AQ9HD42 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC20.24■□□□□ 0.83
CHMP1AQ9HD42 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP1AQ9HD42 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC20.24■□□□□ 0.83
CHMP1AQ9HD42 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.24■□□□□ 0.83
CHMP1AQ9HD42 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP1AQ9HD42 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.24■□□□□ 0.83
CHMP1AQ9HD42 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP1AQ9HD42 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP1AQ9HD42 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP1AQ9HD42 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP1AQ9HD42 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP1AQ9HD42 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP1AQ9HD42 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
CHMP1AQ9HD42 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
CHMP1AQ9HD42 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.23■□□□□ 0.83
CHMP1AQ9HD42 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms