Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
TPM1P09493 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
TPM1P09493 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
TPM1P09493 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
TPM1P09493 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
TPM1P09493 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC26.1■■□□□ 1.77
TPM1P09493 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
TPM1P09493 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC26.1■■□□□ 1.77
TPM1P09493 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
TPM1P09493 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC26.1■■□□□ 1.77
TPM1P09493 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
TPM1P09493 AP003733.4-201ENST00000623785 1697 ntBASIC26.09■■□□□ 1.77
TPM1P09493 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
TPM1P09493 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
TPM1P09493 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
TPM1P09493 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
TPM1P09493 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC26.09■■□□□ 1.77
TPM1P09493 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
TPM1P09493 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
TPM1P09493 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
TPM1P09493 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
TPM1P09493 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC26.08■■□□□ 1.77
TPM1P09493 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC26.08■■□□□ 1.76
TPM1P09493 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
TPM1P09493 TMEM202-AS1-202ENST00000565181 2325 ntBASIC26.07■■□□□ 1.76
TPM1P09493 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
TPM1P09493 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC26.07■■□□□ 1.76
TPM1P09493 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC26.07■■□□□ 1.76
TPM1P09493 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
TPM1P09493 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
TPM1P09493 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC26.07■■□□□ 1.76
TPM1P09493 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
TPM1P09493 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
TPM1P09493 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC26.07■■□□□ 1.76
TPM1P09493 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
TPM1P09493 DUX4L11-201ENST00000611504 1267 ntBASIC26.06■■□□□ 1.76
TPM1P09493 DUX4L12-201ENST00000614593 1267 ntBASIC26.06■■□□□ 1.76
TPM1P09493 DUX4L14-201ENST00000621227 1267 ntBASIC26.06■■□□□ 1.76
TPM1P09493 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
TPM1P09493 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
TPM1P09493 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC26.05■■□□□ 1.76
TPM1P09493 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC26.05■■□□□ 1.76
TPM1P09493 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
TPM1P09493 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC26.05■■□□□ 1.76
TPM1P09493 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
TPM1P09493 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
TPM1P09493 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC26.04■■□□□ 1.76
TPM1P09493 AC097639.1-201ENST00000565519 1891 ntBASIC26.04■■□□□ 1.76
TPM1P09493 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
TPM1P09493 AC133561.1-201ENST00000568600 2415 ntBASIC26.04■■□□□ 1.76
TPM1P09493 EED-207ENST00000528180 1745 ntTSL 5 BASIC26.04■■□□□ 1.76
TPM1P09493 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC26.04■■□□□ 1.76
TPM1P09493 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
TPM1P09493 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
TPM1P09493 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC26.04■■□□□ 1.76
TPM1P09493 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
TPM1P09493 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
TPM1P09493 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
TPM1P09493 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
TPM1P09493 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
TPM1P09493 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
TPM1P09493 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
TPM1P09493 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC26.02■■□□□ 1.76
TPM1P09493 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
TPM1P09493 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
TPM1P09493 HES6-205ENST00000409356 528 ntTSL 2 BASIC26.02■■□□□ 1.76
TPM1P09493 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC26.02■■□□□ 1.76
TPM1P09493 AC126177.7-201ENST00000547904 679 ntBASIC26.02■■□□□ 1.76
TPM1P09493 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.02■■□□□ 1.76
TPM1P09493 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC26.02■■□□□ 1.76
TPM1P09493 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
TPM1P09493 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC26.02■■□□□ 1.76
TPM1P09493 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
TPM1P09493 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC26.02■■□□□ 1.76
TPM1P09493 LINC01124-201ENST00000409786 2117 ntBASIC26.02■■□□□ 1.76
TPM1P09493 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC26.02■■□□□ 1.76
TPM1P09493 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
TPM1P09493 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC26.01■■□□□ 1.75
TPM1P09493 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC26.01■■□□□ 1.75
TPM1P09493 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
TPM1P09493 HLA-V-202ENST00000446817 847 ntBASIC26.01■■□□□ 1.75
TPM1P09493 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
TPM1P09493 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC26■■□□□ 1.75
TPM1P09493 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
TPM1P09493 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
TPM1P09493 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
TPM1P09493 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
TPM1P09493 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC26■■□□□ 1.75
TPM1P09493 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
TPM1P09493 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC25.99■■□□□ 1.75
TPM1P09493 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
TPM1P09493 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
TPM1P09493 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC25.99■■□□□ 1.75
TPM1P09493 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC25.99■■□□□ 1.75
TPM1P09493 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
TPM1P09493 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
TPM1P09493 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
TPM1P09493 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC25.99■■□□□ 1.75
TPM1P09493 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
TPM1P09493 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms