Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 RPS2P1-201ENST00000434010 821 ntBASIC13.55□□□□□ -0.24
FOXA2Q9Y261 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 AC018712.1-201ENST00000455767 687 ntBASIC13.55□□□□□ -0.24
FOXA2Q9Y261 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 AL121894.2-201ENST00000602977 491 ntBASIC13.55□□□□□ -0.24
FOXA2Q9Y261 AL353135.1-201ENST00000606729 504 ntBASIC13.55□□□□□ -0.24
FOXA2Q9Y261 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 FRMD6-AS1-201ENST00000617151 2229 ntBASIC13.55□□□□□ -0.24
FOXA2Q9Y261 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 AC092364.2-201ENST00000596710 2692 ntBASIC13.54□□□□□ -0.24
FOXA2Q9Y261 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 INIP-202ENST00000374236 874 ntTSL 2 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 PPIE-208ENST00000470213 927 ntTSL 3 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 AC093909.1-201ENST00000504731 1122 ntBASIC13.54□□□□□ -0.24
FOXA2Q9Y261 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 PAM16-208ENST00000573553 722 ntTSL 2 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 AL139424.1-201ENST00000607572 797 ntBASIC13.54□□□□□ -0.24
FOXA2Q9Y261 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA2Q9Y261 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 GCK-202ENST00000345378 2421 ntTSL 2 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms