Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE4Q8N205 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE4Q8N205 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SYNE4Q8N205 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SYNE4Q8N205 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC20.62■□□□□ 0.89
SYNE4Q8N205 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE4Q8N205 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
SYNE4Q8N205 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC20.62■□□□□ 0.89
SYNE4Q8N205 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE4Q8N205 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE4Q8N205 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
SYNE4Q8N205 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE4Q8N205 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE4Q8N205 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE4Q8N205 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SYNE4Q8N205 CALY-202ENST00000368555 783 ntTSL 2 BASIC20.62■□□□□ 0.89
SYNE4Q8N205 HLA-V-204ENST00000476601 1289 ntBASIC20.62■□□□□ 0.89
SYNE4Q8N205 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC20.62■□□□□ 0.89
SYNE4Q8N205 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC20.62■□□□□ 0.89
SYNE4Q8N205 AC105021.1-202ENST00000570572 669 ntBASIC20.62■□□□□ 0.89
SYNE4Q8N205 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC20.62■□□□□ 0.89
SYNE4Q8N205 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE4Q8N205 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE4Q8N205 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
SYNE4Q8N205 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE4Q8N205 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE4Q8N205 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE4Q8N205 RNF165-205ENST00000588679 2904 ntBASIC20.62■□□□□ 0.89
SYNE4Q8N205 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE4Q8N205 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.62■□□□□ 0.89
SYNE4Q8N205 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
SYNE4Q8N205 AC012313.1-201ENST00000593393 3059 ntBASIC20.62■□□□□ 0.89
SYNE4Q8N205 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE4Q8N205 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SYNE4Q8N205 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 AL023806.1-201ENST00000603994 1649 ntBASIC20.61■□□□□ 0.89
SYNE4Q8N205 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 AC098859.1-201ENST00000502915 1238 ntBASIC20.61■□□□□ 0.89
SYNE4Q8N205 LY6E-204ENST00000519546 971 ntTSL 2 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 LITAF-210ENST00000571976 548 ntTSL 2 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 LITAF-214ENST00000574703 486 ntTSL 2 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SYNE4Q8N205 GCK-202ENST00000345378 2421 ntTSL 2 BASIC20.61■□□□□ 0.89
SYNE4Q8N205 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.6■□□□□ 0.89
SYNE4Q8N205 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
SYNE4Q8N205 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SYNE4Q8N205 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SYNE4Q8N205 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
SYNE4Q8N205 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.6■□□□□ 0.89
SYNE4Q8N205 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SYNE4Q8N205 ATP5G2P4-201ENST00000442175 420 ntBASIC20.6■□□□□ 0.89
SYNE4Q8N205 RNA5SP410-201ENST00000516285 106 ntBASIC20.6■□□□□ 0.89
SYNE4Q8N205 QPRT-203ENST00000562473 579 ntTSL 3 BASIC20.6■□□□□ 0.89
SYNE4Q8N205 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
SYNE4Q8N205 AC004840.1-201ENST00000636359 365 ntBASIC20.6■□□□□ 0.89
SYNE4Q8N205 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC20.6■□□□□ 0.89
SYNE4Q8N205 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC20.6■□□□□ 0.89
SYNE4Q8N205 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC20.6■□□□□ 0.89
SYNE4Q8N205 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SYNE4Q8N205 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SYNE4Q8N205 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SYNE4Q8N205 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
SYNE4Q8N205 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SYNE4Q8N205 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
SYNE4Q8N205 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms