Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 TFAMP1-201ENST00000412727 736 ntBASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 AC005237.2-201ENST00000434368 219 ntBASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 YTHDF3-AS1-201ENST00000603538 718 ntBASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 HLA-A-202ENST00000376806 1854 ntBASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 MIR943-201ENST00000401286 94 ntBASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 CENPM-205ENST00000404067 905 ntTSL 3 BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 FAM58DP-201ENST00000428076 619 ntBASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 BASP1P1-201ENST00000430708 665 ntBASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 AC007274.1-201ENST00000439805 662 ntBASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 AC099522.2-201ENST00000607001 744 ntBASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 HTR7P1-202ENST00000624664 4411 ntBASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SH3RF1Q7Z6J0 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC19.08■□□□□ 0.65
SH3RF1Q7Z6J0 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.08■□□□□ 0.65
SH3RF1Q7Z6J0 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.65
SH3RF1Q7Z6J0 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC19.08■□□□□ 0.65
SH3RF1Q7Z6J0 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SH3RF1Q7Z6J0 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SH3RF1Q7Z6J0 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
SH3RF1Q7Z6J0 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.08■□□□□ 0.65
SH3RF1Q7Z6J0 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC19.08■□□□□ 0.65
SH3RF1Q7Z6J0 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
SH3RF1Q7Z6J0 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
SH3RF1Q7Z6J0 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SH3RF1Q7Z6J0 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SH3RF1Q7Z6J0 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.65
SH3RF1Q7Z6J0 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SH3RF1Q7Z6J0 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
SH3RF1Q7Z6J0 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 AL355306.1-201ENST00000415580 579 ntBASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 FALEC-201ENST00000416894 566 ntTSL 3 BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 AL671277.1-201ENST00000429656 993 ntBASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SH3RF1Q7Z6J0 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC19.07■□□□□ 0.64
SH3RF1Q7Z6J0 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms