Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD3Q3KNS1 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 GPX1P2-201ENST00000429271 606 ntBASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 MIR4492-201ENST00000581627 80 ntBASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 AL691403.2-201ENST00000618460 490 ntBASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 AC055717.3-201ENST00000622967 595 ntBASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 AC129492.6-201ENST00000611383 1305 ntBASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.35■□□□□ 0.21
PTCHD3Q3KNS1 AC006538.1-201ENST00000567905 1585 ntBASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 AC131009.4-201ENST00000624048 1740 ntBASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 MRPL20P1-201ENST00000400819 433 ntBASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 RPSAP43-201ENST00000402237 625 ntBASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 AC004832.2-201ENST00000426397 482 ntBASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 DNAJB3-201ENST00000446806 729 ntBASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 HCG4B-203ENST00000450128 991 ntBASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 HLA-J-202ENST00000469281 1241 ntBASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 AC091167.2-201ENST00000579581 588 ntBASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 AL139011.1-202ENST00000642063 584 ntBASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 PCDHB19P-201ENST00000570871 2371 ntBASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 SLC22A20-204ENST00000530038 1673 ntBASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD3Q3KNS1 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PTCHD3Q3KNS1 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.33■□□□□ 0.21
PTCHD3Q3KNS1 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
PTCHD3Q3KNS1 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
PTCHD3Q3KNS1 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
PTCHD3Q3KNS1 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
PTCHD3Q3KNS1 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms