Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 CU639417.3-201ENST00000624240 1404 ntBASIC19.15■□□□□ 0.66
HMGCS2P54868 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS2P54868 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS2P54868 PP12613-201ENST00000424958 2230 ntBASIC19.15■□□□□ 0.66
HMGCS2P54868 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
HMGCS2P54868 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.14■□□□□ 0.66
HMGCS2P54868 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.14■□□□□ 0.66
HMGCS2P54868 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
HMGCS2P54868 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
HMGCS2P54868 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
HMGCS2P54868 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS2P54868 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS2P54868 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.14■□□□□ 0.65
HMGCS2P54868 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
HMGCS2P54868 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS2P54868 GNAQP1-201ENST00000444815 1067 ntBASIC19.14■□□□□ 0.65
HMGCS2P54868 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC19.14■□□□□ 0.65
HMGCS2P54868 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC19.14■□□□□ 0.65
HMGCS2P54868 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS2P54868 AC135586.1-201ENST00000539323 574 ntBASIC19.14■□□□□ 0.65
HMGCS2P54868 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC19.14■□□□□ 0.65
HMGCS2P54868 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS2P54868 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS2P54868 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS2P54868 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS2P54868 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC19.14■□□□□ 0.65
HMGCS2P54868 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS2P54868 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS2P54868 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS2P54868 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS2P54868 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HMGCS2P54868 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
HMGCS2P54868 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC19.14■□□□□ 0.65
HMGCS2P54868 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS2P54868 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
HMGCS2P54868 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC19.13■□□□□ 0.65
HMGCS2P54868 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS2P54868 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS2P54868 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS2P54868 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
HMGCS2P54868 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS2P54868 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS2P54868 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS2P54868 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS2P54868 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS2P54868 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS2P54868 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC19.13■□□□□ 0.65
HMGCS2P54868 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
HMGCS2P54868 PTPA-220ENST00000436883 532 ntTSL 4 BASIC19.13■□□□□ 0.65
HMGCS2P54868 NOP2-220ENST00000545915 630 ntTSL 2 BASIC19.13■□□□□ 0.65
HMGCS2P54868 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC19.13■□□□□ 0.65
HMGCS2P54868 AC140912.1-201ENST00000577171 1054 ntBASIC19.13■□□□□ 0.65
HMGCS2P54868 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC19.13■□□□□ 0.65
HMGCS2P54868 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS2P54868 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS2P54868 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
HMGCS2P54868 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
HMGCS2P54868 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.13■□□□□ 0.65
HMGCS2P54868 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC19.13■□□□□ 0.65
HMGCS2P54868 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS2P54868 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS2P54868 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.13■□□□□ 0.65
HMGCS2P54868 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS2P54868 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
HMGCS2P54868 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.13■□□□□ 0.65
HMGCS2P54868 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS2P54868 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
HMGCS2P54868 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
HMGCS2P54868 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC19.13■□□□□ 0.65
HMGCS2P54868 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.13■□□□□ 0.65
HMGCS2P54868 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGCS2P54868 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
HMGCS2P54868 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS2P54868 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
HMGCS2P54868 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.12■□□□□ 0.65
HMGCS2P54868 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS2P54868 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
HMGCS2P54868 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
HMGCS2P54868 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS2P54868 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS2P54868 RPS19-201ENST00000221975 500 ntTSL 3 BASIC19.12■□□□□ 0.65
HMGCS2P54868 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
HMGCS2P54868 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS2P54868 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS2P54868 AL353779.1-201ENST00000434793 351 ntBASIC19.12■□□□□ 0.65
HMGCS2P54868 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS2P54868 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC19.12■□□□□ 0.65
HMGCS2P54868 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC19.12■□□□□ 0.65
HMGCS2P54868 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS2P54868 AC104794.3-201ENST00000566840 1248 ntBASIC19.12■□□□□ 0.65
HMGCS2P54868 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
HMGCS2P54868 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS2P54868 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.12■□□□□ 0.65
HMGCS2P54868 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
HMGCS2P54868 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS2P54868 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS2P54868 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
HMGCS2P54868 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS2P54868 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGCS2P54868 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms