Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
MRE11P49959 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MRE11P49959 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MRE11P49959 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MRE11P49959 TSPY19P-201ENST00000418461 509 ntBASIC19.55■□□□□ 0.72
MRE11P49959 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.55■□□□□ 0.72
MRE11P49959 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC19.55■□□□□ 0.72
MRE11P49959 TSPY18P-201ENST00000441642 509 ntBASIC19.55■□□□□ 0.72
MRE11P49959 TSSC2-201ENST00000450217 709 ntBASIC19.55■□□□□ 0.72
MRE11P49959 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.55■□□□□ 0.72
MRE11P49959 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.55■□□□□ 0.72
MRE11P49959 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.55■□□□□ 0.72
MRE11P49959 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.55■□□□□ 0.72
MRE11P49959 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MRE11P49959 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.55■□□□□ 0.72
MRE11P49959 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MRE11P49959 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.55■□□□□ 0.72
MRE11P49959 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.55■□□□□ 0.72
MRE11P49959 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MRE11P49959 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
MRE11P49959 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MRE11P49959 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MRE11P49959 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
MRE11P49959 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MRE11P49959 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MRE11P49959 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC19.54■□□□□ 0.72
MRE11P49959 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.54■□□□□ 0.72
MRE11P49959 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MRE11P49959 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
MRE11P49959 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MRE11P49959 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
MRE11P49959 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
MRE11P49959 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MRE11P49959 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
MRE11P49959 AC010491.1-201ENST00000563101 2797 ntBASIC19.54■□□□□ 0.72
MRE11P49959 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MRE11P49959 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MRE11P49959 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
MRE11P49959 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
MRE11P49959 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MRE11P49959 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.54■□□□□ 0.72
MRE11P49959 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.54■□□□□ 0.72
MRE11P49959 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.54■□□□□ 0.72
MRE11P49959 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC19.54■□□□□ 0.72
MRE11P49959 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.54■□□□□ 0.72
MRE11P49959 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.54■□□□□ 0.72
MRE11P49959 MIR3180-1-201ENST00000580374 94 ntBASIC19.54■□□□□ 0.72
MRE11P49959 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
MRE11P49959 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.54■□□□□ 0.72
MRE11P49959 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.54■□□□□ 0.72
MRE11P49959 MIR3180-3-201ENST00000584616 94 ntBASIC19.54■□□□□ 0.72
MRE11P49959 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MRE11P49959 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC19.54■□□□□ 0.72
MRE11P49959 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
MRE11P49959 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
MRE11P49959 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
MRE11P49959 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC19.54■□□□□ 0.72
MRE11P49959 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
MRE11P49959 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
MRE11P49959 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
MRE11P49959 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC19.54■□□□□ 0.72
MRE11P49959 AL645728.1-201ENST00000366221 2101 ntBASIC19.54■□□□□ 0.72
MRE11P49959 AL596087.1-201ENST00000400979 1969 ntBASIC19.53■□□□□ 0.72
MRE11P49959 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC19.53■□□□□ 0.72
MRE11P49959 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MRE11P49959 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
MRE11P49959 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC19.53■□□□□ 0.72
MRE11P49959 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
MRE11P49959 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
MRE11P49959 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
MRE11P49959 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MRE11P49959 GOLGA8DP-202ENST00000341390 2184 ntBASIC19.53■□□□□ 0.72
MRE11P49959 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
MRE11P49959 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC19.53■□□□□ 0.72
MRE11P49959 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
MRE11P49959 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MRE11P49959 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MRE11P49959 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MRE11P49959 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
MRE11P49959 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MRE11P49959 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MRE11P49959 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
MRE11P49959 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
MRE11P49959 BX842568.4-201ENST00000421222 227 ntBASIC19.53■□□□□ 0.72
MRE11P49959 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.53■□□□□ 0.72
MRE11P49959 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC19.53■□□□□ 0.72
MRE11P49959 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.53■□□□□ 0.72
MRE11P49959 AP002490.2-201ENST00000524791 560 ntBASIC19.53■□□□□ 0.72
MRE11P49959 KRT18P58-201ENST00000527480 1120 ntBASIC19.53■□□□□ 0.72
MRE11P49959 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MRE11P49959 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC19.53■□□□□ 0.72
MRE11P49959 AC091304.2-201ENST00000564639 760 ntBASIC19.53■□□□□ 0.72
MRE11P49959 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC19.53■□□□□ 0.72
MRE11P49959 AL691403.2-201ENST00000618460 490 ntBASIC19.53■□□□□ 0.72
MRE11P49959 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.53■□□□□ 0.72
MRE11P49959 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC19.53■□□□□ 0.72
MRE11P49959 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MRE11P49959 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MRE11P49959 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MRE11P49959 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms