Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN4P29074 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
PTPN4P29074 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
PTPN4P29074 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN4P29074 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN4P29074 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.86■□□□□ 0.29
PTPN4P29074 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
PTPN4P29074 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.86■□□□□ 0.29
PTPN4P29074 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
PTPN4P29074 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.86■□□□□ 0.29
PTPN4P29074 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN4P29074 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN4P29074 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.86■□□□□ 0.29
PTPN4P29074 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.85■□□□□ 0.29
PTPN4P29074 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN4P29074 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN4P29074 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN4P29074 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.85■□□□□ 0.29
PTPN4P29074 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.85■□□□□ 0.29
PTPN4P29074 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN4P29074 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.85■□□□□ 0.29
PTPN4P29074 RPS2P28-201ENST00000314255 741 ntBASIC16.85■□□□□ 0.29
PTPN4P29074 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.85■□□□□ 0.29
PTPN4P29074 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.85■□□□□ 0.29
PTPN4P29074 AL671883.3-201ENST00000603274 991 ntBASIC16.85■□□□□ 0.29
PTPN4P29074 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.85■□□□□ 0.29
PTPN4P29074 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.85■□□□□ 0.29
PTPN4P29074 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.85■□□□□ 0.29
PTPN4P29074 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN4P29074 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN4P29074 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
PTPN4P29074 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.85■□□□□ 0.29
PTPN4P29074 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
PTPN4P29074 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN4P29074 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
PTPN4P29074 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN4P29074 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN4P29074 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.85■□□□□ 0.29
PTPN4P29074 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN4P29074 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.85■□□□□ 0.29
PTPN4P29074 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN4P29074 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN4P29074 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.85■□□□□ 0.29
PTPN4P29074 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
PTPN4P29074 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN4P29074 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.85■□□□□ 0.29
PTPN4P29074 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
PTPN4P29074 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN4P29074 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN4P29074 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.84■□□□□ 0.29
PTPN4P29074 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.84■□□□□ 0.29
PTPN4P29074 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN4P29074 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN4P29074 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN4P29074 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN4P29074 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN4P29074 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN4P29074 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN4P29074 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.84■□□□□ 0.29
PTPN4P29074 MIR574-201ENST00000385209 96 ntBASIC16.84■□□□□ 0.29
PTPN4P29074 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
PTPN4P29074 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.84■□□□□ 0.29
PTPN4P29074 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN4P29074 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
PTPN4P29074 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
PTPN4P29074 AC112698.1-201ENST00000510299 916 ntBASIC16.84■□□□□ 0.29
PTPN4P29074 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.84■□□□□ 0.29
PTPN4P29074 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.84■□□□□ 0.29
PTPN4P29074 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.84■□□□□ 0.29
PTPN4P29074 AC006538.3-201ENST00000612495 578 ntBASIC16.84■□□□□ 0.29
PTPN4P29074 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.84■□□□□ 0.29
PTPN4P29074 AC117500.6-201ENST00000624871 588 ntBASIC16.84■□□□□ 0.29
PTPN4P29074 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
PTPN4P29074 AL136379.1-201ENST00000623471 2642 ntBASIC16.84■□□□□ 0.29
PTPN4P29074 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN4P29074 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN4P29074 AP005117.1-201ENST00000584346 1413 ntBASIC16.84■□□□□ 0.29
PTPN4P29074 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN4P29074 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN4P29074 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.84■□□□□ 0.29
PTPN4P29074 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
PTPN4P29074 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
PTPN4P29074 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN4P29074 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN4P29074 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.84■□□□□ 0.29
PTPN4P29074 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN4P29074 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.84■□□□□ 0.29
PTPN4P29074 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN4P29074 AC126177.1-201ENST00000547829 2218 ntBASIC16.84■□□□□ 0.29
PTPN4P29074 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.84■□□□□ 0.29
PTPN4P29074 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
PTPN4P29074 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
PTPN4P29074 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
PTPN4P29074 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.29
PTPN4P29074 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
PTPN4P29074 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN4P29074 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN4P29074 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN4P29074 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN4P29074 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms