Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
USF1P22415 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC14.19□□□□□ -0.14
USF1P22415 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
USF1P22415 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
USF1P22415 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
USF1P22415 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
USF1P22415 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC14.19□□□□□ -0.14
USF1P22415 AC092474.2-201ENST00000424288 719 ntBASIC14.19□□□□□ -0.14
USF1P22415 ADH5P3-201ENST00000433842 1137 ntBASIC14.19□□□□□ -0.14
USF1P22415 BCRP1-201ENST00000444246 691 ntBASIC14.19□□□□□ -0.14
USF1P22415 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.19□□□□□ -0.14
USF1P22415 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC14.19□□□□□ -0.14
USF1P22415 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC14.19□□□□□ -0.14
USF1P22415 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
USF1P22415 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
USF1P22415 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
USF1P22415 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC14.19□□□□□ -0.14
USF1P22415 AC009093.7-201ENST00000623853 1223 ntBASIC14.19□□□□□ -0.14
USF1P22415 BANP-227ENST00000626016 2144 ntTSL 2 BASIC14.19□□□□□ -0.14
USF1P22415 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
USF1P22415 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
USF1P22415 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC14.19□□□□□ -0.14
USF1P22415 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC14.19□□□□□ -0.14
USF1P22415 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
USF1P22415 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC14.18□□□□□ -0.14
USF1P22415 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
USF1P22415 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
USF1P22415 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
USF1P22415 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC14.18□□□□□ -0.14
USF1P22415 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
USF1P22415 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC14.18□□□□□ -0.14
USF1P22415 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
USF1P22415 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
USF1P22415 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.18□□□□□ -0.14
USF1P22415 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC14.18□□□□□ -0.14
USF1P22415 AL592309.1-201ENST00000443127 649 ntBASIC14.18□□□□□ -0.14
USF1P22415 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.18□□□□□ -0.14
USF1P22415 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
USF1P22415 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC14.18□□□□□ -0.14
USF1P22415 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC14.18□□□□□ -0.14
USF1P22415 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC14.18□□□□□ -0.14
USF1P22415 MIR4515-201ENST00000584082 81 ntBASIC14.18□□□□□ -0.14
USF1P22415 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC14.18□□□□□ -0.14
USF1P22415 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC14.18□□□□□ -0.14
USF1P22415 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC14.18□□□□□ -0.14
USF1P22415 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 OVCH1-AS1-204ENST00000641955 5529 ntBASIC14.18□□□□□ -0.14
USF1P22415 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC14.18□□□□□ -0.14
USF1P22415 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
USF1P22415 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC14.18□□□□□ -0.14
USF1P22415 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC14.18□□□□□ -0.14
USF1P22415 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USF1P22415 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC14.17□□□□□ -0.14
USF1P22415 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC14.17□□□□□ -0.14
USF1P22415 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC14.17□□□□□ -0.14
USF1P22415 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC14.17□□□□□ -0.14
USF1P22415 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USF1P22415 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
USF1P22415 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC14.17□□□□□ -0.14
USF1P22415 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
USF1P22415 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
USF1P22415 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USF1P22415 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USF1P22415 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USF1P22415 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.17□□□□□ -0.14
USF1P22415 KRT8P48-201ENST00000515599 1220 ntBASIC14.17□□□□□ -0.14
USF1P22415 RNA5SP421-201ENST00000516864 134 ntBASIC14.17□□□□□ -0.14
USF1P22415 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC14.17□□□□□ -0.14
USF1P22415 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC14.17□□□□□ -0.14
USF1P22415 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms